diff_module: diff_module

In zhangjunpeng411/miRSM: Inferring miRNA sponge modules in heterogeneous data

diff_module

Description

Inferring differential modules between two list of module groups

Usage

diff_module(
  Module.group1,
  Module.group2,
  sim.cutoff = 0.8,
  sim.method = "Simpson"
)

Arguments

Module.group1	List object, the first list of module group.
Module.group2	List object, the second list of module group.
sim.cutoff	Similarity cutoff between modules, the interval is [0 1].
sim.method	Methods for calculating similatiry between two modules, select one of three methods (Simpson, Jaccard and Lin). Default method is Simpson.

Value

A list of differential modules

Author(s)

Junpeng Zhang (https://www.researchgate.net/profile/Junpeng-Zhang-2)

Examples

library(GSEABase)
data(BRCASampleData)
modulegenes_WGCNA_all <- module_WGCNA(ceRExp, mRExp)
modulegenes_WGCNA_1 <- module_WGCNA(ceRExp[-1, ], mRExp[-1, ])
Differential_module <- diff_module(geneIds(modulegenes_WGCNA_all), geneIds(modulegenes_WGCNA_1))

zhangjunpeng411/miRSM documentation built on Sept. 23, 2024, 4:37 a.m.