module_miRdistribute: module_miRdistribute

In zhangjunpeng411/miRSM: Inferring miRNA sponge modules in heterogeneous data

module_miRdistribute

Description

miRNA distribution analysis of sharing miRNAs by the identified miRNA sponge modules

Usage

module_miRdistribute(share_miRs)

Arguments

share_miRs

List object: a list of common miRNAs of each miRNA sponge module generated by share_miRs function.

Value

Matrix object: miRNA distribution in each miRNA sponge module.

Author(s)

Junpeng Zhang (https://www.researchgate.net/profile/Junpeng-Zhang-2)

Examples

data(BRCASampleData)
modulegenes_WGCNA <- module_WGCNA(ceRExp, mRExp)
# Identify miRNA sponge modules using sensitivity RV coefficient (SRVC)
miRSM_WGCNA_SRVC <- miRSM(miRExp, ceRExp, mRExp, miRTarget,
                        modulegenes_WGCNA, method = "SRVC",
                        SMC.cutoff = 0.01, RV_method = "RV")
miRSM_WGCNA_SRVC_genes <- miRSM_WGCNA_SRVC[[2]]
miRSM_WGCNA_share_miRs <-  share_miRs(miRExp, miRTarget, miRSM_WGCNA_SRVC_genes)
miRSM_WGCNA_miRdistribute <- module_miRdistribute(miRSM_WGCNA_share_miRs)

zhangjunpeng411/miRSM documentation built on Sept. 23, 2024, 4:37 a.m.