API for zhengxwen/SeqArray
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
| Global functions | |
|---|---|
| .AddVar | Source code |
| .DigestCode | Source code |
| .DigestFile | Source code |
| .DynamicClusterCall | Source code |
| .DynamicForkCall | Source code |
| .Get_MAF_MAC_Missing | Source code |
| .IsForking | Source code |
| .Last.lib | Source code |
| .McoreParallel | Source code |
| .MergeAttr | Source code |
| .MergeNodeAttr | Source code |
| .NumParallel | Source code |
| .Transpose | Source code |
| .append_format | Source code |
| .append_gds | Source code |
| .append_info_variant | Source code |
| .append_node_variant | Source code |
| .append_rep_gds | Source code |
| .cat | Source code |
| .cfunction | Source code |
| .cfunction0 | Source code |
| .cfunction2 | Source code |
| .cfunction3 | Source code |
| .cfunction4 | Source code |
| .cfunction5 | Source code |
| .check_digest | Source code |
| .check_dim | Source code |
| .check_info_dim | Source code |
| .check_var_dim | Source code |
| .clear_varmap | Source code |
| .close_conn | Source code |
| .crayon | Source code |
| .crayon_inverse | Source code |
| .dim | Source code |
| .file_split | Source code |
| .get_temp_fn | Source code |
| .has_dosage | Source code |
| .has_geno | Source code |
| .is_variant_overlap_bychr | Source code |
| .last_str | Source code |
| .maxlen_bit_type | Source code |
| .mc_cleanup | Source code |
| .mc_prepCleanup | Source code |
| .mc_processID | Source code |
| .mc_readChild | Source code |
| .mc_selectChildren | Source code |
| .onLoad | Source code |
| .open_bin | Source code |
| .open_text | Source code |
| .optim_chrom | Source code |
| .plural | Source code |
| .postNode | Source code |
| .pretty | Source code |
| .pretty_size | Source code |
| .r_allele | Source code |
| .r_annot_flt | Source code |
| .r_annot_fmt | Source code |
| .r_annot_id | Source code |
| .r_annot_info | Source code |
| .r_annot_info_sub | Source code |
| .r_annot_qual | Source code |
| .r_chrom | Source code |
| .r_position | Source code |
| .r_samp_annot | Source code |
| .r_samp_annot_sub | Source code |
| .r_sample_id | Source code |
| .r_variant_id | Source code |
| .recvOneResult | Source code |
| .seldim | Source code |
| .sendCall | Source code |
| .seqDebug | Source code |
| .seqGet2bGeno | Source code |
| .seqProgForward | Source code |
| .seqProgress | Source code |
| .str | Source code |
| .summary_allele | Source code |
| .summary_annot_id | Source code |
| .summary_annot_qual | Source code |
| .summary_chrom | Source code |
| .summary_contig | Source code |
| .summary_digest | Source code |
| .summary_filter | Source code |
| .summary_format | Source code |
| .summary_geno | Source code |
| .summary_info | Source code |
| .summary_phase | Source code |
| .summary_position | Source code |
| .summary_reference | Source code |
| .summary_samp_annot | Source code |
| .summary_sample_id | Source code |
| .summary_variant_id | Source code |
| .toAtomicList | Source code |
| .var_path | Source code |
| .variableLengthToList | Source code |
| .variableLengthToMatrix | Source code |
| .vcf_type | Source code |
| KG_P1_SampData | Man page |
| SeqArray | Man page |
| SeqArray-package | Man page |
| SeqVarGDSClass | Man page Source code |
| SeqVarGDSClass-class | Man page |
| alt | Man page |
| alt,SeqVarGDSClass-method | Man page |
| colData | Man page |
| colData,SeqVarGDSClass-method | Man page |
| filt | Man page |
| filt,SeqVarGDSClass-method | Man page |
| fixed | Man page |
| fixed,SeqVarGDSClass-method | Man page |
| geno | Man page |
| geno,SeqVarGDSClass,ANY-method | Man page |
| geno,SeqVarGDSClass-method | Man page |
| granges,SeqVarGDSClass-method | Man page |
| header | Man page |
| header,SeqVarGDSClass-method | Man page |
| info | Man page |
| info,SeqVarGDSClass-method | Man page |
| print.SeqUnitListClass | Source code |
| print.SeqVCFHeaderClass | Source code |
| print.SeqVarDataList | Source code |
| qual | Man page |
| qual,SeqVarGDSClass-method | Man page |
| ref | Man page |
| ref,SeqVarGDSClass-method | Man page |
| rowRanges | Man page |
| rowRanges,SeqVarGDSClass-method | Man page |
| seqAddValue | Man page Source code |
| seqAlleleCount | Man page Source code |
| seqAlleleFreq | Man page Source code |
| seqApply | Man page Source code |
| seqAsVCF | Man page Source code |
| seqBCF2GDS | Man page Source code |
| seqBED2GDS | Man page Source code |
| seqBlockApply | Man page Source code |
| seqCheck | Man page Source code |
| seqClose | Man page |
| seqClose,SeqVarGDSClass-method | Man page |
| seqClose,gds.class-method | Man page |
| seqDelete | Man page Source code |
| seqDigest | Man page Source code |
| seqEmptyFile | Man page Source code |
| seqExampleFileName | Man page Source code |
| seqExport | Man page Source code |
| seqFilterPop | Man page Source code |
| seqFilterPush | Man page Source code |
| seqGDS2BED | Man page Source code |
| seqGDS2SNP | Man page Source code |
| seqGDS2VCF | Man page Source code |
| seqGet2bGeno | Man page Source code |
| seqGetAF_AC_Missing | Man page Source code |
| seqGetData | Man page Source code |
| seqGetFilter | Man page Source code |
| seqGetParallel | Man page Source code |
| seqListVarData | Man page Source code |
| seqMerge | Man page Source code |
| seqMissing | Man page Source code |
| seqMulticoreSetup | Man page Source code |
| seqNewVarData | Man page Source code |
| seqNumAllele | Man page Source code |
| seqOpen | Man page Source code |
| seqOptimize | Man page Source code |
| seqParApply | Man page Source code |
| seqParallel | Man page Source code |
| seqParallelSetup | Man page Source code |
| seqRecompress | Man page Source code |
| seqResetFilter | Man page Source code |
| seqResetVariantID | Man page Source code |
| seqSNP2GDS | Man page Source code |
| seqSetFilter | Man page |
| seqSetFilter,SeqVarGDSClass,ANY-method | Man page |
| seqSetFilter,SeqVarGDSClass,GRanges-method | Man page |
| seqSetFilter,SeqVarGDSClass,GRangesList-method | Man page |
| seqSetFilter,SeqVarGDSClass,IRanges-method | Man page |
| seqSetFilterAnnotID | Man page Source code |
| seqSetFilterChrom | Man page Source code |
| seqSetFilterCond | Man page Source code |
| seqSetFilterPos | Man page Source code |
| seqStorageOption | Man page Source code |
| seqSummary | Man page Source code |
| seqSystem | Man page Source code |
| seqTranspose | Man page Source code |
| seqUnitApply | Man page Source code |
| seqUnitCreate | Man page Source code |
| seqUnitFilterCond | Man page Source code |
| seqUnitMerge | Man page Source code |
| seqUnitSlidingWindows | Man page Source code |
| seqUnitSubset | Man page Source code |
| seqVCF2GDS | Man page Source code |
| seqVCF_Header | Man page Source code |
| seqVCF_SampID | Man page Source code |
| summary.SeqUnitListClass | Source code |
