Files in zhengxwen/SeqArray
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
.Rbuildignore
.github/workflows/r.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AddValue.R
R/AllClasses.R
R/AllGenerics.R
R/ConvVCF2GDS.R
R/Conversion.R
R/Internal.R
R/Methods-SeqVarGDSClass.R
R/Methods.R
R/Summary.R
R/UnitList.R
R/Utilities.R
R/UtilsExport.R
R/UtilsMerge.R
R/asVCF.R
README.md
data/KG_P1_SampData.RData
inst/CITATION
inst/extdata/1KG_phase1_release_v3_chr22.gds
inst/extdata/CEU_Exon.gds
inst/extdata/CEU_Exon.vcf.gz
inst/unitTests/data/Valid.RData
inst/unitTests/test_asVCF.R
inst/unitTests/test_c.R
inst/unitTests/test_cpp.R
inst/unitTests/test_examples.R
inst/unitTests/test_func.R
inst/unitTests/test_utils.R
man/KG_P1_SampData.Rd
man/SeqArray-package.Rd
man/SeqVarGDSClass-class.Rd
man/seqAddValue.Rd
man/seqAlleleFreq.Rd
man/seqApply.Rd
man/seqAsVCF.Rd
man/seqBED2GDS.Rd
man/seqBlockApply.Rd
man/seqCheck.Rd
man/seqClose.Rd
man/seqDelete.Rd
man/seqDigest.Rd
man/seqEmptyFile.Rd
man/seqExampleFileName.Rd
man/seqExport.Rd
man/seqGDS2SNP.Rd
man/seqGDS2VCF.Rd
man/seqGet2bGeno.Rd
man/seqGetData.Rd
man/seqGetFilter.Rd
man/seqMerge.Rd
man/seqMissing.Rd
man/seqNewVarData.Rd
man/seqNumAllele.Rd
man/seqOpen.Rd
man/seqOptimize.Rd
man/seqParallel.Rd
man/seqParallelSetup.Rd
man/seqRecompress.Rd
man/seqResetVariantID.Rd
man/seqSNP2GDS.Rd
man/seqSetFilter.Rd
man/seqSetFilterCond.Rd
man/seqStorageOption.Rd
man/seqSummary.Rd
man/seqSystem.Rd
man/seqTranspose.Rd
man/seqUnitApply.Rd
man/seqUnitFilterCond.Rd
man/seqUnitSlidingWindows.Rd
man/seqUnitSubset.Rd
man/seqVCF2GDS.Rd
man/seqVCF_Header.Rd
man/seqVCF_SampID.Rd
src/ConvGDS2VCF.cpp
src/ConvToGDS.cpp
src/ConvVCF2GDS.cpp
src/FileMerge.cpp
src/GetData.cpp
src/Index.cpp
src/Index.h
src/LinkSNPRelate.cpp
src/Makevars
src/Methods.cpp
src/R_SeqArray.c
src/ReadBySample.cpp
src/ReadBySample.h
src/ReadByUnit.cpp
src/ReadByVariant.cpp
src/ReadByVariant.h
src/SeqArray.cpp
src/pkg_test.cpp
src/samtools_ext.c
src/vectorization.cpp
src/vectorization.h
tests/test.R
vignettes/OverviewSlides.Rmd
vignettes/SeqArray.Rmd
vignettes/SeqArrayTutorial.Rmd
vignettes/benchmark_rand_samp.svg
vignettes/seqarray_bib.bib
vignettes/seqarray_workflow.svg
