renameAndSelectCols: Rename columns and remove everything unecessary

In wolfemd/genomicMateSelectR: Genomic Mate Selection

Rename columns and remove everything unecessary

Description

Rename columns and remove everything unecessary

Usage

renameAndSelectCols(traitabbrevs, indata, customColsToKeep = NULL)

Arguments

traitabbrevs	data.frame with 2 cols (TraitAbbrev and TraitName). TraitName should match exactly to cassava ontology names
indata	data.frame read from cassavabase download
customColsToKeep	char. vec. of any custom cols you added and want to keep

Details

NOTICE: This function is part of a family of functions ("cassavabase_pheno_pipeline") developed as part of the NextGen Cassava Breeding Project genomic selection pipeline. For some examples of their useage:

• IITA_2021GS (should be first use of this package)

• NRCRI_2021GS

• TARI_2020GS

• IITA_2020GS

See Also

Other cassavabase_pheno_pipeline: calcPropMissing(), curateTrialOneTrait(), curateTrialsByTrait(), detectExptDesigns(), fitMultiTrialModel(), makeTrialTypeVar(), nestByTrials(), nestDesignsDetectedByTraits(), nestForMultiTrialAnalysis(), nestTrialsByTrait(), readDBdata()

wolfemd/genomicMateSelectR documentation built on July 1, 2022, 10:42 p.m.