direct_targets: Predict direct targets

In target: Predict Combined Function of Transcription Factors

Description

This function selects overlapping peaks and regions, calculates the distance between them, score each peak and region and calculate rank products of the regions.

Usage

direct_targets(peaks, regions, regions_col, stats_col, base = 1e+05)

Arguments

peaks	A GRanges object
regions	A GRanges object
regions_col	A character string
stats_col	A character string
base	An integer to calculate distances relative to.

Value

A GRanges object. A similar object to regions with several added metadata columns.

Examples

# load peaks and transcripts data
data("real_peaks")
data("real_transcripts")

# direct targets
dt <- direct_targets(real_peaks, real_transcripts, 'name2', 't')

target documentation built on Nov. 8, 2020, 5:28 p.m.