Description Usage Arguments Details Value Examples
pivot_transcript() takes as input a 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> | and returns a 'tbl' with only sample-related columns
1 2 3 4 5 6 7 8 9 10 | pivot_transcript(.data, .transcript = NULL)
## S4 method for signature 'spec_tbl_df'
pivot_transcript(.data, .transcript = NULL)
## S4 method for signature 'tbl_df'
pivot_transcript(.data, .transcript = NULL)
## S4 method for signature 'tidybulk'
pivot_transcript(.data, .transcript = NULL)
|
.data |
A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> | |
.transcript |
The name of the transcript column |
maturing
This functon extracts only transcript-related information for downstream analysis (e.g., visualisation). It is disruptive in the sense that it cannot be passed anymore to tidybulk function.
A 'tbl' object
A 'tbl' object
A 'tbl' object
A 'tbl' object
1 2 3 4 | pivot_transcript(
tidybulk::counts_mini,
.transcript = transcript
)
|
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