Nothing
"barplotgroupes"=function (cluster, width = 1, space = NULL, names.arg = NULL,
legend.text = NULL, horiz = FALSE, density = NULL,
angle = 45, col = NULL, border = par("fg"),
sub = NULL, xlab = NULL, ylab = NULL, xlim = NULL, ylim = NULL,
xpd = TRUE, log = "", axes = TRUE, cex.axis = par("cex.axis"),
cex.names = par("cex.axis"), inside = TRUE, plot = TRUE,
axis.lty = 0, offset = 0, add = FALSE, ...)
{
height <- table(cluster)
if (!missing(inside))
.NotYetUsed("inside", error = FALSE)
if (is.null(space))
space <- if (is.matrix(height) ) #&& beside)
c(0, 1)
else 0.2
space <- space * mean(width)
if (plot && is.null(names.arg))
names.arg <- if (is.matrix(height))
colnames(height)
else names(height)
if (is.vector(height) || (is.array(height) && (length(dim(height)) ==
1))) {
height <- cbind(height)
# beside <- TRUE
if (is.null(col))
col <- c("black", "red", "green3", "blue", "cyan", "magenta",
"darkgray", "darkgoldenrod", "darkgreen", "violet",
"turquoise", "orange", "lightpink", "lavender", "yellow",
"lightgreen", "lightgrey", "lightblue", "darkkhaki",
"darkmagenta", "darkolivegreen", "lightcyan", "darkorange",
"darkorchid", "darkred", "darksalmon", "darkseagreen",
"darkslateblue", "darkslategray", "darkslategrey",
"darkturquoise", "darkviolet", "lightgray", "lightsalmon",
"lightyellow", "maroon")
}
else if (is.matrix(height)) {
if (is.null(col))
col <- grey.colors(nrow(height))
}
else stop("'height' must be a vector or a matrix")
if (is.logical(legend.text))
legend.text <- if (legend.text && is.matrix(height))
rownames(height)
stopifnot(is.character(log))
logx <- logy <- FALSE
if (log != "") {
logx <- length(grep("x", log)) > 0L
logy <- length(grep("y", log)) > 0L
}
if ((logx || logy) && !is.null(density))
stop("Cannot use shading lines in bars when log scale is used")
NR <- nrow(height)
NC <- ncol(height)
if (length(space) == 2)
space <- rep.int(c(space[2], rep.int(space[1], NR -
1)), NC)
width <- rep(width, length.out = NR)
offset <- rep(as.vector(offset), length.out = length(width))
delta <- width/2
w.r <- cumsum(space + width)
w.m <- w.r - delta
w.l <- w.m - delta
log.dat <- (logx && horiz) || (logy && !horiz)
if (log.dat) {
if (min(height + offset, na.rm = TRUE) <= 0)
stop("log scale error: at least one 'height + offset' value <= 0")
if (logx && !is.null(xlim) && min(xlim) <= 0)
stop("log scale error: 'xlim' <= 0")
if (logy && !is.null(ylim) && min(ylim) <= 0)
stop("log scale error: 'ylim' <= 0")
rectbase <- if (logy && !horiz && !is.null(ylim))
ylim[1]
else if (logx && horiz && !is.null(xlim))
xlim[1]
else 0.9 * min(height, na.rm = TRUE)
}
else rectbase <- 0
rAdj <- offset + (if (log.dat)
0.9 * height
else -0.01 * height)
delta <- width/2
w.r <- cumsum(space + width)
w.m <- w.r - delta
w.l <- w.m - delta
if (horiz) {
if (is.null(xlim))
xlim <- range(rAdj, height + offset, na.rm = TRUE)
if (is.null(ylim))
ylim <- c(min(w.l), max(w.r))
}
else {
if (is.null(xlim))
xlim <- c(min(w.l), max(w.r))
if (is.null(ylim))
ylim <- range(rAdj, height + offset, na.rm = TRUE)
}
w.m <- matrix(w.m, ncol = NC)
if (plot) {
opar <- if (horiz)
par(xaxs = "i", xpd = xpd)
else par(yaxs = "i", xpd = xpd)
on.exit(par(opar))
if (!add) {
plot.new()
plot.window(xlim, ylim, log = log, ...)
}
xyrect <- function(x1, y1, x2, y2, horizontal = TRUE,
...) {
if (horizontal)
rect(x1, y1, x2, y2, ...)
else rect(y1, x1, y2, x2, ...)
}
xyrect(rectbase + offset, w.l, c(height) + offset,
w.r, horizontal = horiz, angle = angle, density = density,
col = col, border = border)
}
if (!is.null(names.arg)) {
at.l <- if (length(names.arg) != length(w.m)) {
if (length(names.arg) == NC)
colMeans(w.m)
else stop("incorrect number of names")
}
else w.m
if (horiz) {
axis(2, at = at.l, labels = paste("group",names.arg), lty = axis.lty, cex.axis = cex.names, las = 2)
}
else{
axis(1, at = at.l, labels = paste("group",names.arg), lty = axis.lty, cex.axis = cex.names, las = 0)
}
}
if (!is.null(legend.text)) {
legend.col <- rep(col, length.out = length(legend.text))
if (horiz || !horiz) {
legend.text <- rev(legend.text)
legend.col <- rev(legend.col)
density <- rev(density)
angle <- rev(angle)
}
}
title(main = "number of individuals by groups", sub = sub, xlab = xlab, ylab = ylab,
...)
if (axes)
if (horiz){axis(1, cex.axis = cex.axis, las = 0, ...)}
else { axis(2, cex.axis = cex.axis, las = 2, ...)}
invisible(w.m)
}
# else w.m
#}
#barplot_groupe(v)
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.