hlaAttrBagClass: The class of HIBAG model

In HIBAG: HIBAG -- HLA Genotype Imputation with Attribute Bagging

Description

The class of a HIBAG model, and its instance is returned from hlaAttrBagging.

Value

Return a list of:

n.samp	the total number of training samples
n.snp	the total number of candidate SNP predictors
sample.id	the sample IDs
snp.id	the SNP IDs
snp.position	SNP position in basepair
snp.allele	a vector of characters with the format of “A allele/B allele”
snp.allele.freq	the allele frequencies
hla.locus	the name of HLA locus
hla.allele	the HLA alleles used in the model
hla.freq	the HLA allele frequencies
assembly	the human genome reference, such like "hg19"
model	internal use
appendix	an optional list: platform – supported platform(s); information – other information, like training sets, authors; warning – any warning message

Author(s)

Xiuwen Zheng

References

Zheng X, Shen J, Cox C, Wakefield J, Ehm M, Nelson M, Weir BS; HIBAG – HLA Genotype Imputation with Attribute Bagging; (Abstract 294, Platform/Oral Talk); Present at the 62nd Annual Meeting of the American Society of Human Genetics, November 9, 2012 in San Francisco, California.

Zheng X, Shen J, Cox C, Wakefield J, Ehm M, Nelson M, Weir BS; HIBAG – HLA Genotype Imputation with Attribute Bagging. To appear in the Pharmacogenomics Journal.

See Also

hlaAttrBagging, hlaParallelAttrBagging, hlaAttrBagObj

HIBAG documentation built on May 2, 2019, 4:50 p.m.