hlaSNPHaploClass: The class of SNP haplotypes

Description Value Author(s) See Also

Description

The class of SNP haplotypes, and its instance is returned from hlaMakeSNPHaplo.

Value

There are five components:

haplotype

a haplotype matrix, “# of SNPs” - by - “2 x # of individuals”

sample.id

a vector of sample IDs

snp.id

a vector of SNP IDs

snp.position

a vector of SNP positions in basepair

snp.allele

a vector of characters with the format of “A allele/B allele”

assembly

the human genome reference, such like "hg19"

Author(s)

Xiuwen Zheng

See Also

hlaMakeSNPHaplo


HIBAG documentation built on May 2, 2019, 4:50 p.m.