Description Usage Arguments Value Author(s) See Also
Check the SNP predictors in a HIBAG model, by calculating the overlapping between the model and SNP genotypes.
1 2 | hlaCheckSNPs(model, object,
match.type=c("RefSNP+Position", "RefSNP", "Position"), verbose=TRUE)
|
model |
an object of |
object |
a genotype object of |
match.type |
|
verbose |
if TRUE, show information |
return a data.frame
for individual classifiers:
NumOfValidSNP |
the number of non-missing SNPs in an individual classifier |
NumOfSNP |
the number of SNP predictors in an individual classifier |
fraction |
NumOfValidSNP / NumOfSNP |
Xiuwen Zheng
hlaAttrBagging
, predict.hlaAttrBagClass
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