Description Usage Arguments Details Value Author(s) See Also
To get a subset of haplotypes from a hlaSNPHaploClass
object.
1 | hlaHaploSubset(haploobj, samp.sel=NULL, snp.sel=NULL)
|
haploobj |
a haplotype object of |
samp.sel |
a logical vector, or an integer vector of indices |
snp.sel |
a logical vector, or an integer vector of indices |
haploobj$haplotype
is a numeric matrix, with an entry value 0
standing for B (ZERO A allele), 1 for A (ONE A allele) and others for missing
values (missing genotypes are usually set to be NA).
Return a hlaSNPHaploClass
object, and it is a list:
haplotype |
a haplotype matrix, “# of SNPs” - by - “2 x # of individuals” |
sample.id |
a vector of sample IDs |
snp.id |
a vector of SNP IDs |
snp.position |
a vector of SNP positions in basepair |
snp.allele |
a vector of characters with the format of “A allele/B allele” |
Xiuwen Zheng
hlaMakeSNPGeno
, hlaMakeSNPHaplo
,
hlaGenoSubset
, hlaGenoCombine
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