Description Usage Arguments Value Author(s) See Also
To convert a SNP GDS file to an object of hlaSNPGenoClass
.
1 2 3 | hlaGDS2Geno(gds.fn, rm.invalid.allele=FALSE,
import.chr="xMHC", assembly=c("auto", "hg18", "hg19", "unknown"),
verbose=TRUE)
|
gds.fn |
the SNP GDS file used by the |
rm.invalid.allele |
if TRUE, remove SNPs with invalid alleles |
import.chr |
the chromosome, "1" .. "22", "X", "Y", "XY", "MT", "xMHC", or "", where "xMHC" implies the extended MHC on chromosome 6, and "" for all SNPs |
assembly |
the human genome reference: "hg19" (default), "hg18", "auto" refers to "hg19" |
verbose |
if TRUE, show information |
Return an object of hlaSNPGenoClass
.
Xiuwen Zheng
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