cghseg: Segmentation methods for array CGH analysis

cghseg is an R package dedicated to the analysis of CGH profiles using segmentation models.

AuthorFranck Picard, Mark Hoebeke, Emilie Lebarbier, Vincent Miele, Guillem Rigaill, Stephane Robin
Date of publication2013-01-03 15:05:30
MaintainerFranck Picard <franck.picard@univ-lyon1.fr>
LicenseGPL ( >= 2)
Version1.0.1

View on R-Forge

Functions

alpha<- Man page
alpha<-,CGHoptions-method Man page
alpha<--methods Man page
beta<- Man page
beta<-,CGHoptions-method Man page
beta<--methods Man page
calling<- Man page
calling<-,CGHoptions-method Man page
calling<--methods Man page
CGHdata-class Man page
[,CGHdata-method Man page
CGHoptions-class Man page
[,CGHoptions-method Man page
CGHresults-class Man page
[,CGHresults-method Man page
GCnorm<- Man page
GCnorm<-,CGHoptions-method Man page
GCnorm<--methods Man page
getbgoutliers Man page
getbgoutliers,CGHresults-method Man page
getbgoutliers-methods Man page
getbp Man page
getbp,CGHresults-method Man page
getbp-methods Man page
getlevels Man page
getlevels,CGHresults-method Man page
getlevels-methods Man page
getmultiKmax Man page
getmultiKmax,CGHdata-method Man page
getmultiKmax-methods Man page
getprobebias,CGHresults-method Man page
getsegprofiles Man page
getsegprofiles,CGHresults-method Man page
getsegprofiles-methods Man page
getuniKmax Man page
getuniKmax,CGHdata-method Man page
getuniKmax-methods Man page
initialize,CGHdata-method Man page
initialize,CGHresults-method Man page
itermax<- Man page
itermax<-,CGHoptions-method Man page
itermax<--methods Man page
multiseg Man page
multiseg,CGHdata-method Man page
multiseg-methods Man page
nblevels<- Man page
nblevels<-,CGHoptions-method Man page
nblevels<--methods Man page
nbprocs<- Man page
nbprocs<-,CGHoptions-method Man page
nbprocs<--methods Man page
print,CGHdata-method Man page
print,CGHoptions-method Man page
select<- Man page
select<-,CGHoptions-method Man page
select<--methods Man page
show,CGHdata-method Man page
show,CGHoptions-method Man page
simulprofiles Man page
summary,CGHdata-method Man page
summary,CGHresults-method Man page
uniseg Man page
uniseg,CGHdata-method Man page
uniseg-methods Man page
wavenorm<- Man page
wavenorm<-,CGHoptions-method Man page
wavenorm<--methods Man page

Files

cghseg
cghseg/INDEX
cghseg/R
cghseg/R/DP2EM.R cghseg/R/getmBIC.R cghseg/R/unisegmean.R cghseg/R/multiseg.R cghseg/R/getuniKmax.R cghseg/R/uniseg.R cghseg/R/getbias.R cghseg/R/PKselection.R cghseg/R/CGHoptions.R cghseg/R/multisegmixt.R cghseg/R/ILSclust.R cghseg/R/cghseg.R cghseg/R/ILS.R cghseg/R/zzz.R cghseg/R/Kselection.R cghseg/R/golden.search.R cghseg/R/multisegclust.R cghseg/R/simulprofiles.R cghseg/R/getmultiKmax.R cghseg/R/CGHdata.R cghseg/R/unisegclust.R cghseg/R/unisegmixt.R cghseg/R/multisegmean.R cghseg/R/CGHresults.R cghseg/R/multisegout.R
cghseg/NAMESPACE
cghseg/DESCRIPTION
cghseg/man
cghseg/man/calling.Rd cghseg/man/wavenorm.Rd cghseg/man/multiseg.Rd cghseg/man/CGHresults-class.Rd cghseg/man/getuniKmax.Rd cghseg/man/nbprocs.Rd cghseg/man/CGHoptions-class.Rd cghseg/man/getbgoutliers.Rd cghseg/man/GCnorm.Rd cghseg/man/beta.Rd cghseg/man/getbp.Rd cghseg/man/nblevels.Rd cghseg/man/getlevels.Rd cghseg/man/select.Rd cghseg/man/uniseg.Rd cghseg/man/getsegprofiles.Rd cghseg/man/simulprofiles.Rd cghseg/man/alpha.Rd cghseg/man/CGHdata-class.Rd cghseg/man/getmultiKmax.Rd cghseg/man/itermax.Rd
cghseg/src
cghseg/src/lvinc.h
cghseg/src/Mstep.h
cghseg/src/Mstep.cc
cghseg/src/lvinc.cc
cghseg/src/helperfuncs.cc
cghseg/src/usefullReadAndWrite.cc
cghseg/src/accessToR.cc
cghseg/src/Segmentation_ibp.h
cghseg/src/hybrid.h
cghseg/src/Estep.h
cghseg/src/ApproxSeg.h
cghseg/src/helperfuncs.h
cghseg/src/usefullReadAndWrite.h
cghseg/src/conv_hull.cc
cghseg/src/ApproxSeg.c
cghseg/src/Segmentation_mixt.cc
cghseg/src/Rwrappers.h
cghseg/src/numlib.h
cghseg/src/compactEM_algo.cc
cghseg/src/Makevars
cghseg/src/Segmentation_ibp.cc
cghseg/src/repmat.cc
cghseg/src/colibri.cc
cghseg/src/liste.cc
cghseg/src/Segmentation_mixt.h
cghseg/src/compactEM_init_Reg.h
cghseg/src/cghseg_types.h
cghseg/src/Estep.cc
cghseg/src/EM_algo.h
cghseg/src/compactEM_init.h
cghseg/src/compactEM_init.cc
cghseg/src/compactEM_init_Reg.cc
cghseg/src/Segmentation_mean.h
cghseg/src/compactEM_algo.h
cghseg/src/repmat.h
cghseg/src/colibriAnalysis.cc
cghseg/src/numlib.cc
cghseg/src/liste.h
cghseg/src/EM_init.cc
cghseg/src/LinDynProg.cc
cghseg/src/Rwrappers.cc
cghseg/src/EM_algo.cc
cghseg/src/ApproxSeg_2.c
cghseg/src/neighbors.h
cghseg/src/logdens.h
cghseg/src/polynome2.h
cghseg/src/Segmentation_mean.cc
cghseg/src/logdens.cc
cghseg/src/hybrid.cc
cghseg/src/colibri.h
cghseg/src/EM_init.h
cghseg/src/conv_hull.h
cghseg/src/LinDynProgMelange.cc
cghseg/src/neighbors.cc

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