multiseg: Joint segmentation of multiple CGH profiles

In cghseg: Segmentation methods for array CGH analysis

Description

Joint segmentation of multiple CGH profiles

Usage

multiseg(.Object,CGHo,uniKmax=NULL,multiKmax=NULL)

Arguments

.Object	an object of the CGHdata class
CGHo	an object of the CGHoption class
uniKmax	list containing the maximum number of segments per profile. If !is.null(uniKmax) in the entry of the method, the method checks its validity.
multiKmax	total number of segments for joint segmentation

Value

CGHr	object of class CGHresult

Author(s)

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

Examples

#set.seed(1)
#simul          = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd           = new("CGHdata",Y=simul$Y)
#CGHo           = new("CGHoptions")
#CGHr           = multiseg(CGHd,CGHo)

cghseg documentation built on May 2, 2019, 4:43 p.m.