select: Replace slot select
In cghseg: Segmentation methods for array CGH analysis

Description Arguments Details Author(s) References See Also Examples

changes slot select of a CGHoptions object

.Object

an object of the CGHoptions class

CGHo["select"] sets the model selection criterion to be used in the procedure. The default criterion is based on the mBIC proposed by Zhang & Siegmund (2007). If CGHo["select"]=="none" then the algorithm is run for the maximum number of segments.

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

alpha, beta, getmultiKmax, getuniKmax

#set.seed(1)
#simul        = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd         = new("CGHdata",Y=simul$Y)
#CGHo         = new("CGHoptions")
#select(CGHo) = "mBIC"
#CGHr         = multiseg(CGHd,CGHo)

#select(CGHo) = "none"
#CGHr         = multiseg(CGHd,CGHo)