getsegprofiles: getsegprofiles

In cghseg: Segmentation methods for array CGH analysis

Description

Extract segmented profiles from a CGHresults object

Usage

getsegprofiles(.Object)

Arguments

.Object

an object of the CGHresults class

Value

segprofiles

list of segmented profiles

Author(s)

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

Examples

#set.seed(1)
#simul          = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd           = new("CGHdata",Y=simul$Y)
#CGHo           = new("CGHoptions")
#calling(CGHo)  = FALSE
#CGHr           = multiseg(CGHd,CGHo)
#segprofiles    = getsegprofiles(CGHr)

#calling(CGHo)  = TRUE
#CGHr           = multiseg(CGHd,CGHo)
#segprofiles    = getsegprofiles(CGHr)

cghseg documentation built on May 2, 2019, 4:43 p.m.