move: Visualizing and Analyzing Animal Track Data

Contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.

AuthorBart Kranstauber <bart.kranstauber@uni-konstanz.de>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Date of publication2016-04-06 11:25:04
MaintainerBart Kranstauber <bart.kranstauber@uni-konstanz.de>
LicenseGPL (>=3)
Version2.0.541
http://computational-ecology.com/main-move.html

View on R-Forge

Man pages

angle: angle information from a track or track stack

as.data.frame: Return a Data Frame

brownian.bridge.dyn: Creates a DBBMM object

brownian.motion.variance.dyn: Calculates the dynamic brownian motion variance

burst: Bursting a track

burstId: Returns burstId

citations: Extract the citation of a Move or MoveStack object

contour: Contour plot

coordinates: Extract the track coordinates from a Move/MoveStack object

corridor: Corridor

DBBMM-class: The DBBMM class

DBBMMStack-class: The DBBMMStack class

dBGBvariance-class: Class to store the orthogonal and parallel variance

dBMvarianceTmp-class: dBMvarianceTmp class

distance: distance information from a track or track stack

dynBGB: dynBGB class

dynBGB-methods: Calculation of the dynamic Bivariate Gausian Bridge

dynBGBvariance-methods: calculate variance for a track using a running window

equalProj: Checks projections for being equal

fishers: A MoveStack

getMotionVariance: Returns the estimated motion variance

getMovebank: Creates an URL to download Data from Movebank

getMovebankAnimals: Animals, tags and IDs in a Movebank study

getMovebankData: Download data from Movebank

getMovebankID: Study ID

getMovebankSensorAttributes: Available sensor attributes

getMovebankSensors: Information about Movebank sensors

getMovebankStudies: All studies on Movebank

getMovebankStudy: Returns study information

getVolumeUD: Modify a UD raster

hrBootstrap: Calculates and plot the Minimum Convex Polygon for a track

idData: Functions for dealing with the idData

interpolateTime: Interpolate a trajectory

leroy: GPS track data from a fisher

lines: Plotting a track as lines

move: Create a Move object

move2ade: Convert a Move or MoveStack object to adehabitat compatible...

movebankLogin: Login into Movebank

MovebankLogin-class: The MovebankLogin class

MoveBurst-class: MoveBurst class

Move-class: The Move class

move-package: An overview of the functions in this package

moveStack: Creating a MoveStack

MoveStack-class: The MoveStack class

n.indiv: Extract the number of individuals of a Move or MoveStack...

n.locs: Extract the number of locations of a Move or MoveStack object

outerProbability: Calculates the probabilities at the edges of a raster

plot: Plotting track or raster

plotBursts: Plotting the centroids of a track

points: Plotting the points of a track

raster: Extract raster from DBBMM

raster2contour: Convert raster to contour lines

ricky: GPS track data from a fisher

searchMovebankStudies: Search for a study

seglength: Calculates the segment length of a track

sensor: Extract the sensor of a Move or MoveStack object

show: Show a Move object

speed: speed information from a track or track stack

split: Splitting a MoveStack

spTransform: Transform Move object projection method

subset: Returns a single object from a MoveStack

summary: A summary of a DBBMM or DBBMMStack, Move or MoveStack object

time: time information from a track or track stack

time.lag: Calculates the time lags between the coordinates

timeLag: Calculates the time lags between the coordinates

timestamps: Extract the timestamps of a Move or MoveStack object

trackId: Returns trackId

turnAngleGc: Calculates turning angles on great circle tracks

UD-class: The UD class

udData: Dynamic brownian bridges

unUsedRecords: Creates unused records data

unUsedRecords-class: .unUsedRecords and .unUsedRecordsStack class

Functions

angle Man page
angle,.MoveTrackSingle-method Man page
angle,.MoveTrackStack-method Man page
angleSummary Man page
angleSummary,.MoveTrackSingle-method Man page
angleSummary,.MoveTrackStack-method Man page
as.data.frame Man page
as.data.frame,Move-method Man page
brownian.bridge.dyn Man page
brownian.bridge.dyn,ANY,RasterLayer,missing,character-method Man page
brownian.bridge.dyn,dBMvarianceBurst,RasterLayer,missing,numeric Man page
brownian.bridge.dyn,dBMvariance,RasterLayer,missing,numeric-meth Man page
brownian.bridge.dyn,Move,missing,numeric,numeric-method Man page
brownian.bridge.dyn,Move,numeric,missing,numeric-method Man page
brownian.bridge.dyn,MoveStack,RasterLayer,missing,numeric-method Man page
brownian.bridge.dyn,.MoveTrackSingle,missing,missing,numeric-met Man page
brownian.bridge.dyn,.MoveTrackSingle,RasterLayer,missing,numeric Man page
brownian.bridge.dyn,SpatialPointsDataFrame,missing,numeric,ANY-m Man page
brownian.bridge.dyn,SpatialPointsDataFrame,numeric,missing,ANY-m Man page
brownian.motion.variance.dyn Man page
brownian.motion.variance.dyn,.MoveTrackSingleBurst,numeric,numer Man page
brownian.motion.variance.dyn,.MoveTrackSingle,numeric,numeric,nu Man page
burst Man page
burstId Man page
burstId,MoveBurst-method Man page
burstId,.MoveTrackSingleBurst-method Man page
burst,Move,character-method Man page
burst,Move,factor-method Man page
burst,Move,numeric-method Man page
burst,.MoveTrackSingleBurst,missing-method Man page
citations Man page
citations<- Man page
citations<-,.MoveGeneral-method Man page
citations,.MoveGeneral-method Man page
contour Man page
contour,.UD-method Man page
contour,.UDStack-method Man page
coordinates Man page
coordinates,Move-method Man page
corridor Man page
corridor,.MoveTrackSingle-method Man page
corridor,.MoveTrackStack-method Man page
DBBMM Man page
DBBMM-class Man page
dbbmmstack Man page
DBBMMStack Man page
DBBMMStack-class Man page
[,dBGBvariance,ANY,ANY-method Man page
dBGBvariance-class Man page
dBGBvarianceTmp-class Man page
[,dBMvariance,ANY,ANY-method Man page
[,dBMvarianceBurst,ANY,ANY-method Man page
[,dBMvarianceStack,ANY,ANY-method Man page
dBMvarianceTmp-class Man page
distance Man page
distance,.MoveTrackSingle-method Man page
distance,.MoveTrackStack-method Man page
distanceSummary Man page
distanceSummary,.MoveTrackSingle-method Man page
distanceSummary,.MoveTrackStack-method Man page
dynBGB Man page
dynBGB-class Man page
dynBGB,dBGBvariance,RasterLayer,numeric-method Man page
dynBGB,.MoveTrackSingle,ANY,character-method Man page
dynBGB,.MoveTrackSingle,missing,ANY-method Man page
dynBGB,.MoveTrackSingle,numeric,ANY-method Man page
dynBGB,.MoveTrackSingle,RasterLayer,numeric-method Man page
dynBGBvariance Man page
dynBGBvariance Man page
dynBGBvariance,.MoveTrackSingle,numeric,numeric,numeric-method Man page
dynBGBvarianceTmp Man page
equalProj Man page
equalProj,list-method Man page
fishers Man page
getMotionVariance Man page
getMotionVariance,DBBMMBurstStack-method Man page
getMotionVariance,DBBMM-method Man page
getMotionVariance,DBBMMStack-method Man page
getMotionVariance,dBGBvarianceTmp-method Man page
getMotionVariance,dBMvarianceStack-method Man page
getMotionVariance,dBMvarianceTmp-method Man page
getMotionVariance,dynBGB-method Man page
getMovebank Man page
getMovebankAnimals Man page
getMovebankAnimals,ANY,missing-method Man page
getMovebankAnimals,ANY,MovebankLogin-method Man page
getMovebankAnimals,character,MovebankLogin-method Man page
getMovebankAnimals,numeric,MovebankLogin-method Man page
getMovebank,character,missing-method Man page
getMovebank,character,MovebankLogin-method Man page
getMovebankData Man page
getMovebankData,ANY,ANY,missing-method Man page
getMovebankData,ANY,ANY,MovebankLogin-method Man page
getMovebankData,character,ANY,MovebankLogin-method Man page
getMovebankData,numeric,character,MovebankLogin-method Man page
getMovebankData,numeric,missing,MovebankLogin-method Man page
getMovebankData,numeric,numeric,MovebankLogin-method Man page
getMovebankID Man page
getMovebankID,character,missing-method Man page
getMovebankID,character,MovebankLogin-method Man page
getMovebankSensors Man page
getMovebankSensors,ANY,missing-method Man page
getMovebankSensors,ANY,MovebankLogin-method Man page
getMovebankSensorsAttributes Man page
getMovebankSensorsAttributes,ANY,MovebankLogin-method Man page
getMovebankSensorsAttributes,character,MovebankLogin-method Man page
getMovebankSensorsAttributes,numeric,MovebankLogin-method Man page
getMovebankSensors,character,MovebankLogin-method Man page
getMovebankSensors,missing,missing-method Man page
getMovebankSensors,missing,MovebankLogin-method Man page
getMovebankSensors,numeric,MovebankLogin-method Man page
getMovebankStudies Man page
getMovebankStudies,missing-method Man page
getMovebankStudies,MovebankLogin-method Man page
getMovebankStudy Man page
getMovebankStudy,ANY,missing-method Man page
getMovebankStudy,ANY,MovebankLogin-method Man page
getMovebankStudy,character,MovebankLogin-method Man page
getMovebankStudy,numeric,MovebankLogin-method Man page
getVolumeUD Man page
getVolumeUD,.UD-method Man page
getVolumeUD,.UDStack-method Man page
hrBootstrap Man page
hrBootstrap,.MoveTrackStack-method Man page
hrBootstrap,SpatialPoints-method Man page
idData Man page
idData<- Man page
idData<-,.MoveTrack,ANY,ANY,ANY-method Man page
idData,.MoveTrack-method Man page
idData<-,.MoveTrack,missing,missing,data.frame-method Man page
interpolateTime Man page
interpolateTime,.MoveTrackSingle,difftime-method Man page
interpolateTime,.MoveTrackSingle,numeric-method Man page
interpolateTime,.MoveTrackSingle,POSIXct-method Man page
leroy Man page
leroydbbmm Man page
lines Man page
lines,.MoveTrackSingleBurst-method Man page
lines,.MoveTrackSingle-method Man page
lines,.MoveTrackStack-method Man page
move Man page
move2ade Man page
move2ade,.MoveTrackSingle-method Man page
move2ade,.MoveTrackStack-method Man page
movebankLogin Man page
MovebankLogin Man page
movebankLogin,character,character-method Man page
movebankLogin,character,missing-method Man page
MovebankLogin-class Man page
movebankLogin,missing,character-method Man page
movebankLogin,missing,missing-method Man page
MoveBurst-class Man page
move,character,missing,missing,missing,missing-method Man page
Move-class Man page
move,connection,missing,missing,missing,missing-method Man page
.MoveGeneral-class Man page
move,ltraj,missing,missing,missing,missing-method Man page
move,numeric,numeric,POSIXct,data.frame,character-method Man page
move,numeric,numeric,POSIXct,data.frame,CRS-method Man page
move,numeric,numeric,POSIXct,data.frame,missing-method Man page
move,numeric,numeric,POSIXct,missing,ANY-method Man page
move-package Man page
moveStack Man page
MoveStack Man page
[,MoveStack,ANY,ANY-class Man page
[,MoveStack,ANY,ANY-method Man page
moveStack,character-method Man page
[[,MoveStack,character,missing-method Man page
MoveStack-class Man page
moveStack,list-method Man page
.MoveTrack Man page
[,.MoveTrack,ANY,ANY-method Man page
.MoveTrack-class Man page
.MoveTrackSingle Man page
[,.MoveTrackSingleBurst,ANY,ANY-method Man page
.MoveTrackSingleBurst-class Man page
.MoveTrackSingle-class Man page
[,.MoveTrackStack,ANY,ANY-method Man page
[[,.MoveTrackStack,character,missing-method Man page
[[,.MoveTrackStack,logical,missing-method Man page
[[,.MoveTrackStack,numeric,missing-method Man page
n.indiv Man page
n.indiv,Move-method Man page
n.indiv,.MoveTrackStack-method Man page
n.locs Man page
n.locs,.MoveTrackStack-method Man page
n.locs,SpatialPointsDataFrame-method Man page
outerProbability Man page
outerProbability,DBBMMStack-method Man page
outerProbability,RasterLayer-method Man page
plot Man page
plotBursts Man page
plotBursts,list-method Man page
plotBursts,.MoveTrackSingleBurst-method Man page
plot,.MoveTrackSingleBurst,missing-method Man page
plot,.MoveTrackSingle,missing-method Man page
plot,.MoveTrackStack,missing-method Man page
points Man page
points,.MoveTrackSingleBurst-method Man page
points,.MoveTrackSingle-method Man page
points,.MoveTrackStack-method Man page
raster Man page
raster2contour Man page
raster2contour,.UD-method Man page
raster2contour,.UDStack-method Man page
raster,DBBMM-method Man page
raster,DBBMMStack-method Man page
ricky Man page
searchMovebankStudies Man page
searchMovebankStudies,character,missing-method Man page
searchMovebankStudies,character,MovebankLogin-method Man page
seglength Man page
seglength,SpatialPointsDataFrame-method Man page
sensor Man page
sensor,.MoveTrack-method Man page
sensor,.unUsedRecords-method Man page
show Man page
show,dBMvariance-method Man page
show,dBMvarianceTmp-method Man page
show,MoveBurst-method Man page
show,.MoveGeneral-method Man page
show,Move-method Man page
show,MoveStack-method Man page
show,.MoveTrack-method Man page
show,.MoveTrackSingleBurst-method Man page
show,.MoveTrackSingle-method Man page
show,.MoveTrackStack-method Man page
show,.unUsedRecords-method Man page
speed Man page
speed,.MoveTrackSingle-method Man page
speed,.MoveTrackStack-method Man page
speedSummary Man page
speedSummary,.MoveTrackSingle-method Man page
speedSummary,.MoveTrackStack-method Man page
split Man page
split,DBBMMStack,missing-method Man page
split,MoveStack,missing-method Man page
split,.MoveTrackSingleBurst,missing-method Man page
split,.MoveTrackStack,missing-method Man page
split,.UDStack,missing-method Man page
spTransform Man page
spTransform,Move,character-method Man page
spTransform,Move,missing-method Man page
summary Man page
summary,.MoveTrackSingle-method Man page
summary,.MoveTrackStack-method Man page
summary,.UD-method Man page
summary,.UDStack-method Man page
time.lag Man page
timeLag Man page
time.lag,.MoveTrackSingle-method Man page
timeLag,.MoveTrackSingle-method Man page
time.lag,.MoveTrackStack-method Man page
timeLag,.MoveTrackStack-method Man page
timestamps Man page
timestamps<- Man page
timestamps<-,.MoveTrack-method Man page
timestamps,.MoveTrack-method Man page
timestamps,.MoveTrackSingle-method Man page
timestamps,.unUsedRecords-method Man page
timeSummary Man page
timeSummary,.MoveTrackSingle-method Man page
timeSummary,.MoveTrackStack-method Man page
trackId Man page
trackId,MoveStack-method Man page
trackId,.MoveTrackStack-method Man page
trackId,.unUsedRecordsStack-method Man page
turnAngleGc Man page
turnAngleGc,.MoveTrackSingle-method Man page
turnAngleGc,.MoveTrackStack-method Man page
.UD Man page
.UD-class Man page
.UDStack-class Man page
unUsedRecords Man page
unUsedRecords<- Man page
[,.unUsedRecords,ANY,ANY-method Man page
.unUsedRecords-class Man page
unUsedRecords<-,.MoveTrackSingle,logical-method Man page
unUsedRecords<-,.MoveTrackStack,logical-method Man page
[,.unUsedRecordsStack,ANY,ANY-method Man page
.unUsedRecordsStack-class Man page
unUsedRecords,.unUsedRecords-method Man page
unUsedRecords,.unUsedRecordsStack-method Man page

Files

move/ChangeLog
move/DESCRIPTION
move/NAMESPACE
move/R
move/R/AAClass.R move/R/Summary.R move/R/UDStack.R move/R/WebImport.R move/R/angle.R move/R/brownianbridgedyn.R move/R/brownianmotionvariancedyn.R move/R/burst.R move/R/burstId.R move/R/citations.R move/R/contour.R move/R/corridor.R move/R/dBGB.R move/R/data.frame.R move/R/distance.R move/R/equalProj.R move/R/extcalc.R move/R/extractDBMvar.R move/R/getMotionVariance.R move/R/getVolumeUD.R move/R/hrBootstrap.R move/R/idData.R move/R/interpolateTime.R move/R/lineMidpoint.R move/R/lines.R move/R/move.R move/R/move2ade.R move/R/moveStack.R move/R/nindiv.R move/R/nlocs.R move/R/outerProbability.R move/R/plot.R move/R/plotBursts.R move/R/points.R move/R/print.R move/R/raster2contour.R move/R/seglength.R move/R/sensor.R move/R/show.R move/R/spTransform.R move/R/spatialLines.R move/R/speed.R move/R/split.R move/R/subset.R move/R/time.R move/R/timelag.R move/R/timestamps.R move/R/trackId.R move/R/turnAngle.R move/R/unUsedRecords.R
move/build
move/build/vignette.rds
move/data
move/data/datalist
move/data/dbbmmstack.RData
move/data/fishers.RData
move/data/leroy.RData
move/data/leroydbbmm.RData
move/data/ricky.RData
move/inst
move/inst/doc
move/inst/doc/browseMovebank.R
move/inst/doc/browseMovebank.Rnw
move/inst/doc/browseMovebank.pdf
move/inst/doc/move.R
move/inst/doc/move.Rnw
move/inst/doc/move.pdf
move/inst/extdata
move/inst/extdata/createsRDataFile.R
move/inst/extdata/leroy.csv.gz
move/inst/extdata/move.RData
move/man
move/man/DBBMM-class.Rd move/man/DBBMMStack-class.Rd move/man/Move-class.Rd move/man/MoveBurst-class.Rd move/man/MoveStack-class.Rd move/man/MovebankLogin-class.Rd move/man/UD-class.Rd move/man/angle.Rd move/man/as.data.frame.Rd move/man/brownian.bridge.dyn.Rd move/man/brownian.motion.variance.dyn.Rd move/man/burst.Rd move/man/burstId.Rd move/man/citations.Rd move/man/contour.Rd move/man/coordinates.Rd move/man/corridor.Rd move/man/dBGBvariance-class.Rd move/man/dBMvarianceTmp-class.Rd move/man/distance.Rd move/man/dynBGB-methods.Rd move/man/dynBGB.Rd move/man/dynBGBvariance-methods.Rd move/man/equalProj.Rd move/man/fishers.Rd move/man/getMotionVariance.Rd move/man/getMovebank.Rd move/man/getMovebankAnimals.Rd move/man/getMovebankData.Rd move/man/getMovebankID.Rd move/man/getMovebankSensorAttributes.Rd move/man/getMovebankSensors.Rd move/man/getMovebankStudies.Rd move/man/getMovebankStudy.Rd move/man/getVolumeUD.Rd move/man/hrBootstrap.Rd move/man/idData.Rd move/man/interpolateTime.Rd move/man/leroy.Rd move/man/lines.Rd move/man/move-package.Rd move/man/move.Rd move/man/move2ade.Rd move/man/moveStack.Rd move/man/movebankLogin.Rd move/man/n.indiv.Rd move/man/n.locs.Rd move/man/outerProbability.Rd move/man/plot.Rd move/man/plotBursts.Rd move/man/points.Rd move/man/raster.Rd move/man/raster2contour.Rd move/man/ricky.Rd move/man/searchMovebankStudies.Rd move/man/seglength.Rd move/man/sensor.Rd move/man/show.Rd move/man/spTransform.Rd move/man/speed.Rd move/man/split.Rd move/man/subset.Rd move/man/summary.Rd move/man/time.Rd move/man/time.lag.Rd move/man/timeLag.Rd move/man/timestamps.Rd move/man/trackId.Rd move/man/turnAngleGc.Rd move/man/udData.Rd move/man/unUsedRecords-class.Rd move/man/unUsedRecords.Rd
move/src
move/src/EMD_DEFS.h
move/src/bgbVar.c
move/src/bgb_bbmm.c
move/src/emd.cpp
move/src/emd_hat.h
move/src/emd_hat_impl.h
move/src/emd_hat_signatures_interface.h
move/src/flow_utils.h
move/src/min_cost_flow.h
move/tests
move/tests/test-all.R
move/tests/testthat
move/tests/testthat/test.brownian.bridge.dyn.R
move/tests/testthat/test.burst.R
move/tests/testthat/test.citations.R
move/tests/testthat/test.dBGB.R
move/tests/testthat/test.extentCalc.R
move/tests/testthat/test.getMotionVariance.R
move/tests/testthat/test.idData.R
move/tests/testthat/test.interpolateTime.R
move/tests/testthat/test.measures.R
move/tests/testthat/test.move.R
move/tests/testthat/test.moveAde.R
move/tests/testthat/test.moveStack.R
move/tests/testthat/test.seglength.R
move/tests/testthat/test.smallFunctions.R
move/tests/testthat/test.spTransform.R
move/tests/testthat/test.storedData.R
move/tests/testthat/test.subSet.R
move/tests/testthat/test.turnAngle.R
move/tests/testthat/test.unUsed.R
move/vignettes
move/vignettes/a.Rdata
move/vignettes/browseMovebank.Rnw
move/vignettes/move.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.