API for vegan
Community Ecology Package

Global functions
.} for EACH ! (+ one \usage{} & \arguments{	Man page Man page
AIC.fitspecaccum	Man page
AIC.radfit	Man page
AIC.radfit.frame	Man page
BCI	Man page
BCI.env	Man page
CCorA	Man page
MDSrotate	Man page
MOStest	Man page
RsquareAdj	Man page
RsquareAdj.cca	Man page
RsquareAdj.default	Man page
RsquareAdj.glm	Man page
RsquareAdj.lm	Man page
RsquareAdj.rda	Man page
SSarrhenius	Man page
SSgitay	Man page
SSgleason	Man page
SSlomolino	Man page
TukeyHSD.betadisper	Man page
add1.cca	Man page
ade2vegancca	Man page
adipart	Man page
adipart.default	Man page
adipart.formula	Man page
adonis	Man page
alias.cca	Man page
anosim	Man page
anova.betadisper	Man page
anova.cca	Man page
anova.ccabyaxis	Man page
anova.ccabymargin	Man page
anova.ccabyterm	Man page
anova.ccanull	Man page
anova.prc	Man page
as.fisher	Man page
as.hclust.spantree	Man page
as.mcmc.oecosimu	Man page
as.mcmc.permat	Man page
as.mlm	Man page
as.mlm.cca	Man page
as.mlm.rda	Man page
as.preston	Man page
as.rad	Man page
as.ts.oecosimu	Man page
as.ts.permat	Man page
beals	Man page
betadisper	Man page
betadiver	Man page
bgdispersal	Man page
bioenv	Man page
bioenv.default	Man page
bioenv.formula	Man page
bioenvdist	Man page
biplot.CCorA	Man page
biplot.rda	Man page
boxplot.betadisper	Man page
boxplot.specaccum	Man page
bstick	Man page
bstick.cca	Man page
bstick.decorana	Man page
bstick.default	Man page
bstick.prcomp	Man page
bstick.princomp	Man page
cIndexKM	Man page
calibrate	Man page
calibrate.cca	Man page
calibrate.ordisurf	Man page
capscale	Man page
cascadeKM	Man page
cca	Man page
cca.default	Man page
cca.formula	Man page
cca.object	Man page
centroids.cca	Man page
clamtest	Man page
coef.cca	Man page
coef.radfit	Man page
coef.radfit.frame	Man page
coef.rda	Man page
commsim	Man page
commsimulator	Man page
confint.MOStest	Man page
contribdiv	Man page
cophenetic.spantree	Man page
coverscale	Man page
decorana	Man page
decostand	Man page
density.adonis	Man page
density.anosim	Man page
density.mantel	Man page
density.mrpp	Man page
density.oecosimu	Man page
density.permustats	Man page
density.permutest.cca	Man page
density.protest	Man page
densityplot.adonis	Man page
densityplot.oecosimu	Man page
densityplot.permustats	Man page
designdist	Man page
deviance.cca	Man page
deviance.fitspecaccum	Man page
deviance.radfit	Man page
deviance.radfit.frame	Man page
deviance.rda	Man page
dispindmorisita	Man page
dispweight	Man page
distconnected	Man page
diversity	Man page
downweight	Man page
drarefy	Man page
drop1.cca	Man page
dune	Man page
dune.env	Man page
dune.phylodis	Man page
dune.taxon	Man page
eigengrad	Man page
eigenvals	Man page
eigenvals.betadisper	Man page
eigenvals.cca	Man page
eigenvals.default	Man page
eigenvals.dudi	Man page
eigenvals.pca	Man page
eigenvals.pcnm	Man page
eigenvals.pco	Man page
eigenvals.prcomp	Man page
eigenvals.princomp	Man page
eigenvals.wcmdscale	Man page
envfit	Man page
envfit.default	Man page
envfit.formula	Man page
estaccumR	Man page
estimateR	Man page
estimateR.data.frame	Man page
estimateR.default	Man page
estimateR.matrix	Man page
eventstar	Man page
extractAIC.cca	Man page
factorfit	Man page
fieller.MOStest	Man page
fisher.alpha	Man page
fisherfit	Man page
fitspecaccum	Man page
fitted.capscale	Man page
fitted.cca	Man page
fitted.procrustes	Man page
fitted.radfit	Man page
fitted.radfit.frame	Man page
fitted.rda	Man page
gdispweight	Man page
getPermuteMatrix	Man page
goodness	Man page
goodness.cca	Man page
goodness.metaMDS	Man page
goodness.monoMDS	Man page
head.summary.cca	Man page
hierParseFormula	Man page
hiersimu	Man page
hiersimu.default	Man page
hiersimu.formula	Man page
howHead	Man page
humpfit	Man page
identify.ordiplot	Man page
indpower	Man page
inertcomp	Man page
initMDS	Man page
intersetcor	Man page
isomap	Man page
isomapdist	Man page
kendall.global	Man page
kendall.post	Man page
labels.envfit	Man page
lines.fitspecaccum	Man page
lines.humpfit	Man page
lines.permat	Man page
lines.preston	Man page
lines.prestonfit	Man page
lines.procrustes	Man page
lines.radfit	Man page
lines.radline	Man page
lines.spantree	Man page
lines.specaccum	Man page
linestack	Man page
logLik, radfit	Man page
logLik, radfit.frame	Man page
make.cepnames	Man page
make.commsim	Man page
mantel	Man page
mantel.correlog	Man page
mantel.partial	Man page
meandist	Man page
metaMDS	Man page
metaMDSdist	Man page
metaMDSiter	Man page
metaMDSredist	Man page
metaMDSrotate	Man page
mite	Man page
mite.env	Man page
mite.pcnm	Man page
mite.xy	Man page
model.frame.cca	Man page
model.matrix.cca	Man page
monoMDS	Man page
mrpp	Man page
mso	Man page
msoplot	Man page
multipart	Man page
multipart.default	Man page
multipart.formula	Man page
nestedbetajac	Man page
nestedbetasor	Man page
nestedchecker	Man page
nesteddisc	Man page
nestedn0	Man page
nestednodf	Man page
nestedtemp	Man page
no.shared	Man page
nobs.CCorA	Man page
nobs.adonis	Man page
nobs.betadisper	Man page
nobs.cca	Man page
nobs.decorana	Man page
nobs.isomap	Man page
nobs.metaMDS	Man page
nobs.pcnm	Man page
nobs.procrustes	Man page
nobs.rad	Man page
nobs.varpart	Man page
nobs.wcmdscale	Man page
nullmodel	Man page
oecosimu	Man page
orderingKM	Man page
ordiArgAbsorber	Man page
ordiArrowMul	Man page
ordiArrowTextXY	Man page
ordiGetData	Man page
ordiNAexclude	Man page
ordiNApredict	Man page
ordiParseFormula	Man page
ordiR2step	Man page
ordiTerminfo	Man page
ordiareatest	Man page
ordiarrows	Man page
ordicloud	Man page
ordicluster	Man page
ordiellipse	Man page
ordigrid	Man page
ordihull	Man page
ordilabel	Man page
ordilattice.getEnvfit	Man page
ordimedian	Man page
ordiplot	Man page
ordipointlabel	Man page
ordiresids	Man page
ordisegments	Man page
ordispider	Man page
ordisplom	Man page
ordistep	Man page
ordisurf	Man page
ordisurf.default	Man page
ordisurf.formula	Man page
orditkplot	Man page
orditorp	Man page
ordixyplot	Man page
panel.ordi	Man page
panel.ordi3d	Man page
panel.ordiarrows	Man page
pasteCall	Man page
pcnm	Man page
permatfull	Man page
permatswap	Man page
permustats	Man page
permustats.CCorA	Man page
permustats.adonis	Man page
permustats.anosim	Man page
permustats.anova.cca	Man page
permustats.envfit	Man page
permustats.factorfit	Man page
permustats.mantel	Man page
permustats.mrpp	Man page
permustats.mso	Man page
permustats.oecosimu	Man page
permustats.ordiareatest	Man page
permustats.permutest.betadisper	Man page
permustats.permutest.cca	Man page
permustats.protest	Man page
permustats.vectorfit	Man page
permutations	Man page
permutest	Man page
permutest.betadisper	Man page
permutest.cca	Man page
permutest.default	Man page
persp.renyiaccum	Man page
persp.tsallisaccum	Man page
plot.MOStest	Man page
plot.anosim	Man page
plot.betadisper	Man page
plot.betadiver	Man page
plot.cascadeKM	Man page
plot.cca	Man page
plot.clamtest	Man page
plot.contribdiv	Man page
plot.decorana	Man page
plot.envfit	Man page
plot.fisher	Man page
plot.fisherfit	Man page
plot.fitspecaccum	Man page
plot.humpfit	Man page
plot.isomap	Man page
plot.mantel.correlog	Man page
plot.meandist	Man page
plot.metaMDS	Man page
plot.monoMDS	Man page
plot.nestednodf	Man page
plot.nestedtemp	Man page
plot.ordipointlabel	Man page
plot.ordisurf	Man page
plot.orditkplot	Man page
plot.permat	Man page
plot.poolaccum	Man page
plot.prc	Man page
plot.preston	Man page
plot.prestonfit	Man page
plot.procrustes	Man page
plot.rad	Man page
plot.radfit	Man page
plot.radfit.frame	Man page
plot.radline	Man page
plot.renyi	Man page
plot.renyiaccum	Man page
plot.spantree	Man page
plot.specaccum	Man page
plot.taxondive	Man page
plot.varpart	Man page
plot.varpart234	Man page
plot.vegandensity	Man page
plot.wcmdscale	Man page
points.cca	Man page
points.decorana	Man page
points.humpfit	Man page
points.metaMDS	Man page
points.ordiplot	Man page
points.orditkplot	Man page
points.procrustes	Man page
points.radfit	Man page
points.radline	Man page
poolaccum	Man page
postMDS	Man page
prc	Man page
predict.cca	Man page
predict.decorana	Man page
predict.fitspecaccum	Man page
predict.humpfit	Man page
predict.procrustes	Man page
predict.radfit	Man page
predict.radfit.frame	Man page
predict.radline	Man page
predict.rda	Man page
predict.specaccum	Man page
pregraphKM	Man page
prepanel.ordi3d	Man page
prestondistr	Man page
prestonfit	Man page
print.commsim	Man page
print.nullmodel	Man page
print.permat	Man page
print.simmat	Man page
print.specaccum	Man page
print.summary.cca	Man page
print.summary.decorana	Man page
print.summary.permat	Man page
procrustes	Man page
profile.MOStest	Man page
profile.humpfit	Man page
protest	Man page
pyrifos	Man page
qqmath.permustats	Man page
qqnorm.permustats	Man page
rad.lognormal	Man page
rad.null	Man page
rad.preempt	Man page
rad.zipf	Man page
rad.zipfbrot	Man page
radfit	Man page
radfit.data.frame	Man page
radfit.default	Man page
radlattice	Man page
rankindex	Man page
rarecurve	Man page
rarefy	Man page
rareslope	Man page
raupcrick	Man page
rda	Man page
rda.default	Man page
rda.formula	Man page
read.cep	Man page
renyi	Man page
renyiaccum	Man page
reorder.hclust	Man page
residuals.cca	Man page
residuals.procrustes	Man page
rev.hclust	Man page
rrarefy	Man page
scores	Man page
scores.betadisper	Man page
scores.betadiver	Man page
scores.cca	Man page
scores.decorana	Man page
scores.default	Man page
scores.envfit	Man page
scores.hclust	Man page
scores.lda	Man page
scores.metaMDS	Man page
scores.monoMDS	Man page
scores.ordihull	Man page
scores.ordiplot	Man page
scores.orditkplot	Man page
scores.pcnm	Man page
scores.rda	Man page
scores.wcmdscale	Man page
screeplot.cca	Man page
screeplot.decorana	Man page
screeplot.prcomp	Man page
screeplot.princomp	Man page
showvarparts	Man page
simper	Man page
simpleRDA2	Man page
simulate.capscale	Man page
simulate.cca	Man page
simulate.nullmodel	Man page
simulate.rda	Man page
sipoo	Man page
spandepth	Man page
spantree	Man page
specaccum	Man page
specnumber	Man page
specpool	Man page
specpool2vect	Man page
specslope	Man page
spenvcor	Man page
stepacross	Man page
str.nullmodel	Man page
stressplot	Man page
stressplot.capscale	Man page
stressplot.cca	Man page
stressplot.default	Man page
stressplot.monoMDS	Man page
stressplot.prcomp	Man page
stressplot.princomp	Man page
stressplot.rda	Man page
stressplot.wcmdscale	Man page
summary.anosim	Man page
summary.bioenv	Man page
summary.cca	Man page
summary.clamtest	Man page
summary.decorana	Man page
summary.dispweight	Man page
summary.eigenvals	Man page
summary.humpfit	Man page
summary.isomap	Man page
summary.meandist	Man page
summary.ordiellipse	Man page
summary.ordihull	Man page
summary.permat	Man page
summary.permustats	Man page
summary.poolaccum	Man page
summary.prc	Man page
summary.procrustes	Man page
summary.radfit.frame	Man page
summary.simper	Man page
summary.specaccum	Man page
summary.taxondive	Man page
swan	Man page
tabasco	Man page
tail.summary.cca	Man page
taxa2dist	Man page
taxondive	Man page
text.cca	Man page
text.decorana	Man page
text.metaMDS	Man page
text.ordiplot	Man page
text.orditkplot	Man page
text.procrustes	Man page
tolerance	Man page
tolerance.cca	Man page
treedist	Man page
treedive	Man page
treeheight	Man page
tsallis	Man page
tsallisaccum	Man page
update.nullmodel	Man page
varechem	Man page
varespec	Man page
varpart	Man page
varpart2	Man page
varpart3	Man page
varpart4	Man page
vectorfit	Man page
vegan	Man page
vegan-defunct	Man page
vegan-deprecated	Man page
vegan-package	Man page
veganCovEllipse	Man page
veganMahatrans	Man page
vegandocs	Man page
vegdist	Man page
vegemite	Man page
veiledspec	Man page
vif.cca	Man page
wascores	Man page
wcmdscale	Man page
weights.cca	Man page
weights.decorana	Man page
weights.rda	Man page
wisconsin	Man page