add1.cca | Add or Drop Single Terms to a Constrained Ordination Model |
adipart | Additive Diversity Partitioning and Hierarchical Null Model... |
adonis | Permutational Multivariate Analysis of Variance Using... |
anosim | Analysis of Similarities |
anova.cca | Permutation Test for Constrained Correspondence Analysis,... |
as.mlm | Refit Constrained Ordination as a Multiple Response Linear... |
BCI | Barro Colorado Island Tree Counts |
beals | Beals Smoothing and Degree of Absence |
betadisper | Multivariate homogeneity of groups dispersions (variances) |
betadiver | Indices of beta Diversity |
bgdispersal | Coefficients of Biogeographical Dispersal Direction |
bioenv | Best Subset of Environmental Variables with Maximum (Rank)... |
biplot.rda | PCA biplot |
capscale | [Partial] Constrained Analysis of Principal Coordinates or... |
cascadeKM | K-means partitioning using a range of values of K |
cca | [Partial] [Constrained] Correspondence Analysis and... |
cca.object | Result Object from Constrained Ordination with cca, rda or... |
CCorA | Canonical Correlation Analysis |
clamtest | Multinomial Species Classification Method (CLAM) |
commsim | Create a Object for Null Model Algorithms |
contribdiv | Contribution Diversity Approach |
decorana | Detrended Correspondence Analysis and Basic Reciprocal... |
decostand | Standardization Methods for Community Ecology |
designdist | Design your own Dissimilarities |
deviance.cca | Statistics Resembling Deviance and AIC for Constrained... |
dispindmorisita | Morisita index of intraspecific aggregation |
dispweight | Dispersion-based weighting of species counts |
distconnected | Connectedness of Dissimilarities |
diversity | Ecological Diversity Indices |
dune | Vegetation and Environment in Dutch Dune Meadows. |
dune.taxon | Taxonomic Classification and Phylogeny of Dune Meadow Species |
eigenvals | Extract Eigenvalues from an Ordination Object |
envfit | Fits an Environmental Vector or Factor onto an Ordination |
eventstar | Scale Parameter at the Minimum of the Tsallis Evenness... |
fisherfit | Fit Fisher's Logseries and Preston's Lognormal Model to... |
goodness.cca | Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA,... |
goodness.metaMDS | Goodness of Fit and Shepard Plot for Nonmetric... |
humpfit | No-interaction Model for Hump-backed Species Richness vs.... |
indpower | Indicator Power of Species |
isomap | Isometric Feature Mapping Ordination |
kendall.global | Kendall coefficient of concordance |
linestack | Plots One-dimensional Diagrams without Overwriting Labels |
make.cepnames | Abbreviates a Botanical or Zoological Latin Name into an... |
mantel | Mantel and Partial Mantel Tests for Dissimilarity Matrices |
mantel.correlog | Mantel Correlogram |
MDSrotate | Rotate First MDS Dimension Parallel to an External Variable |
metaMDS | Nonmetric Multidimensional Scaling with Stable Solution from... |
mite | Oribatid Mite Data with Explanatory Variables |
model.matrix.cca | Reconstruct Model Frame and Model Matrices of Constrained... |
monoMDS | Global and Local Non-metric Multidimensional Scaling and... |
MOStest | Mitchell-Olds & Shaw Test for the Location of Quadratic... |
mrpp | Multi Response Permutation Procedure and Mean Dissimilarity... |
mso | Functions for performing and displaying a spatial... |
multipart | Multiplicative Diversity Partitioning |
nestedtemp | Nestedness Indices for Communities of Islands or Patches |
nobs.adonis | Extract the Number of Observations from a vegan Fit. |
nullmodel | Null Model and Simulation |
oecosimu | Evaluate Statistics with Null Models of Biological... |
ordiarrows | Add Arrows and Line Segments to Ordination Diagrams |
ordiArrowTextXY | Support Functions for Drawing Vectors |
ordihull | Display Groups or Factor Levels in Ordination Diagrams |
ordilabel | Add Text on Non-transparent Label to an Ordination Plot. |
ordiplot | Alternative plot and identify Functions for Ordination |
ordipointlabel | Ordination Plots with Points and Optimized Locations for Text |
ordiresids | Plots of Residuals and Fitted Values for Constrained... |
ordistep | Choose a Model by Permutation Tests in Constrained Ordination |
ordisurf | Fit and Plot Smooth Surfaces of Variables on Ordination. |
orditkplot | Ordination Plot with Movable Labels |
orditorp | Add Text or Points to Ordination Plots |
ordixyplot | Trellis (Lattice) Plots for Ordination |
pcnm | Principal Coordinates of Neighbourhood Matrix |
permatfull | Matrix Permutation Algorithms for Presence-Absence and Count... |
permustats | Extract, Analyse and Display Permutation Results |
permutations | Permutation tests in Vegan |
permutest.betadisper | Permutation test of multivariate homogeneity of groups... |
plot.cca | Plot or Extract Results of Constrained Correspondence... |
prc | Principal Response Curves for Treatments with Repeated... |
predict.cca | Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA,... |
procrustes | Procrustes Rotation of Two Configurations and PROTEST |
pyrifos | Response of Aquatic Invertebrates to Insecticide Treatment |
radfit | Rank - Abundance or Dominance / Diversity Models |
rankindex | Compares Dissimilarity Indices for Gradient Detection |
rarefy | Rarefaction Species Richness |
raupcrick | Raup-Crick Dissimilarity with Unequal Sampling Densities of... |
read.cep | Reads a CEP (Canoco) data file |
renyi | Renyi and Hill Diversities and Corresponding Accumulation... |
reorder.hclust | Reorder a Hierarchical Clustering Tree |
RsquareAdj | Adjusted R-square |
scores | Get Species or Site Scores from an Ordination |
screeplot.cca | Screeplots for Ordination Results and Broken Stick... |
simper | Similarity Percentages |
simulate.rda | Simulate Responses with Gaussian Error or Permuted Residuals... |
sipoo | Birds in the Archipelago of Sipoo (Sibbo) |
spantree | Minimum Spanning Tree |
specaccum | Species Accumulation Curves |
specpool | Extrapolated Species Richness in a Species Pool |
SSarrhenius | Self-Starting nls Species-Area Models |
stepacross | Stepacross as Flexible Shortest Paths or Extended... |
stressplot.wcmdscale | Display Ordination Distances Against Observed Distances in... |
taxondive | Indices of Taxonomic Diversity and Distinctness |
tolerance | Species tolerances and sample heterogeneities |
treedive | Functional Diversity and Community Distances from Species... |
tsallis | Tsallis Diversity and Corresponding Accumulation Curves |
varechem | Vegetation and environment in lichen pastures |
varpart | Partition the Variation of Community Matrix by 2, 3, or 4... |
vegan-defunct | Defunct Functions in Package 'vegan' |
vegan-deprecated | Deprecated Functions in vegan package |
vegandocs | Display vegan Documentation |
vegan-internal | Internal vegan functions |
vegan-package | Community Ecology Package: Ordination, Diversity and... |
vegdist | Dissimilarity Indices for Community Ecologists |
vegemite | Display Compact Ordered Community Tables |
wascores | Weighted Averages Scores for Species |
wcmdscale | Weighted Classical (Metric) Multidimensional Scaling |
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