Files in Basic4Cseq
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
NAMESPACE
DESCRIPTION
build/vignette.rds
data/liverData.RData
data/liverDataRaw.RData
R/normalizeFragmentData.r
R/readPointsOfInterestFile.r
R/drawHeatmap.r
R/getReadDistribution.r
R/checkRestrictionEnzymeSequence.r
R/giveEnzymeSequence.r
R/printBEDFragmentLibrary.r
R/prepare4CseqData.r
R/AllClasses.r
R/visualizeViewpoint.r
R/createVirtualFragmentLibrary.r
R/AllGenerics.r
R/formatFragmentData.r
R/readsToFragments.r
R/methods-Data4Cseq.r
R/chooseNearCisFragments.r
R/printWigFile.r
R/plotTransInteractions.r
R/simulateDigestion.r
vignettes/vignette.Rnw
vignettes/images/drawHeatmap_Output.pdf
vignettes/images/visualizeViewpoint_Output.pdf
man/plotTransInteractions.Rd
man/exportVisualizationFragmentData.Rd
man/createVirtualFragmentLibrary.Rd
man/chooseNearCisFragments.Rd
man/giveEnzymeSequence.Rd
man/prepare4CseqData.Rd
man/Data4Cseq.Rd
man/drawHeatmap.Rd
man/normalizeFragmentData.Rd
man/readPointsOfInterestFile.Rd
man/importVisualizationFragmentData.Rd
man/liverDataRaw.Rd
man/readsToFragments.Rd
man/drawDigestionFragmentHistogram.Rd
man/printBEDFragmentLibrary.Rd
man/checkRestrictionEnzymeSequence.Rd
man/simulateDigestion.Rd
man/liverData.Rd
man/Data4Cseq-class.Rd
man/getReadDistribution.Rd
man/visualizeViewpoint.Rd
man/printWigFile.Rd
inst/doc/vignette.R
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
inst/extdata/RCircos_GRCm38_ideogram.csv
inst/extdata/fetalLiverCutter.sam
inst/extdata/vfl_aagctt_catg_mm9_54_vp.csv
inst/extdata/veryShortReference.fasta.ann
inst/extdata/enzymeData.csv
inst/extdata/transInteractionData.txt
inst/extdata/veryShortReference.fasta
inst/extdata/veryShortReference.fasta.bwt
inst/extdata/veryShortReference.fasta.sa
inst/extdata/RCircos_HG19_ideogram.csv
inst/extdata/veryShortReference.fasta.amb
inst/extdata/veryShortLib.csv
inst/extdata/fetalLiverVP.bed
inst/extdata/fetalLiverShort.bam
inst/extdata/fetalLiver_finalFragments.csv
inst/extdata/veryShortReference.fasta.pac
inst/extdata/veryShortExample.fastq
