API for BioNet
Routines for the functional analysis of biological networks

Global functions
BioNet Man page
BioNet-package Man page
XGMML.destription Source code
XGMML.edges Source code
XGMML.nodes Source code
add.edge.attrs Source code
add.node.attrs Source code
affyID2ppiID Source code
aggrPvals Man page Source code
bumOptim Man page Source code
cleanFile Source code
compareNetworks Man page Source code
consensusScores Man page Source code
fbum Man page Source code
fbumLL Man page Source code
fbumnLL Source code
fdrThreshold Man page Source code
fitBumModel Man page Source code
fpLL Source code
getCompScores Man page Source code
getEdgeList Man page Source code
getPathScore Source code
graph.eda Source code
graph.noa Source code
graph.sif Source code
graph.table Source code
hist.bum Man page Source code
largestComp Man page Source code
largestScoreComp Man page Source code
loadNetwork.sif Man page Source code
loadNetwork.tab Man page Source code
makeNetwork Man page Source code
mapByVar Man page Source code
node.color Source code
pbum.solve Source code
permutateNodes Man page Source code
piUpper Man page Source code
plot.bum Man page Source code
plot3dModule Man page Source code
plotLLSurface Man page Source code
plotModule Man page Source code
print.bum Man page Source code
pvaluesExample Man page
readHeinzGraph Man page Source code
readHeinzTree Man page Source code
resamplingPvalues Man page Source code
rmSelfLoops Man page Source code
runFastHeinz Man page Source code
runHeinz Man page Source code
save3dModule Man page Source code
saveGraph.net Source code
saveGraph.tab Source code
saveGraph.tgf Source code
saveNetwork Man page Source code
scanFDR Man page Source code
scoreFunction Man page Source code
scoreNodes Man page Source code
scoreOffset Man page Source code
sortedEdgeList Man page Source code
subNetwork Man page Source code
subNetwork0 Source code
subNetwork1 Source code
summary.bum Man page Source code
writeHeinz Man page Source code
writeHeinzEdges Man page Source code
writeHeinzNodes Man page Source code
BioNet documentation built on Nov. 17, 2017, 9:15 a.m.