readHeinzGraph: Convert HEINZ output to graph

Description Usage Arguments Value Author(s) Examples

View source: R/HeinzUtils.R

Description

Function to convert the HEINZ output to a graph object, or if the output is in matrix form, it will create a list of graphs. The function needs the node and the original network, from which the module is calculated.

Usage

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readHeinzGraph(node.file, network, format=c("graphNEL", "igraph"))

Arguments

node.file

Heinz node output file.

network

Original network from which Heinz input was created.

format

Graph format of output, either igraph or graphNEL.

Value

Graph object.

Author(s)

Daniela Beisser

Examples

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library(DLBCL)
data(interactome)
# precomputed Heinz output files
## Not run: lib <- file.path(.path.package("BioNet"), "extdata") 
module <- readHeinzGraph(node.file=file.path(lib, "lymphoma_nodes_001.txt.0.hnz"), network=interactome, format="graphNEL");
plotModule(module);

## End(Not run)

BioNet documentation built on May 31, 2017, 3:38 p.m.