pvaluesExample: Example p-values for aggregation statistics

Description Usage Examples


Data example consisting of a matrix of p-values. Each gene has two corresponding p-values. These p-values can be aggregated into a p-value of p-values by the method aggrPvals.





Example output

Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: RBGL
                   p.vals1    p.vals2
CHGB(1114)    3.818336e-06 0.05878416
HIP1R(9026)   4.436901e-06 0.01559665
DR1(1810)     2.182991e-05 0.05188112
MYH7(4625)    2.869730e-05 0.16578313
ALCAM(214)    3.490709e-05 0.02891593
PPIF(10105)   4.068558e-05 0.08612971
RPS13(6207)   5.330600e-05 0.14150887
LRRC41(10489) 6.527406e-05 0.11997074
ACCN2(41)     8.685111e-05 0.16360554
PFKM(5213)    1.121724e-04 0.17626577

BioNet documentation built on Nov. 8, 2020, 5:48 p.m.