subNetwork: Create a subGraph

Description Usage Arguments Value Author(s) Examples

Description

The function creates a subgraph with the nodes given in the nodeList or for these nodes including their direct neighbors.

Usage

1
subNetwork(nodeList, network, neighbors=c("none", "first"))

Arguments

nodeList

Character vector of nodes, contained in the subgraph.

network

Graph that is used for subgraph extraction.

neighbors

Neighborhood, that is chosen for the subgraph extraction. "none" are only the selected nodes, "first" includes the direct neighbors of the selected nodes.

Value

A graph object.

Author(s)

Marcus Dittrich

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
library(igraph)
el <- cbind(c("a", "b", "c", "d", "e", "f", "d"), c("b", "c", "d", "e", "f", "a", "b"))
graph <- graph.edgelist(el, directed=TRUE)

node.list <- c("a", "b", "c")
graph2 <- subNetwork(nodeList=node.list, network=graph)
## Not run: par(mfrow=c(1,2));
plotModule(graph);
plotModule(graph2)
## End(Not run)

# or in graphNEL format: 
graph3 <- igraph.to.graphNEL(graph)
graph4 <- subNetwork(nodeList=node.list, network=graph3)
graph3
graph4


Search within the BioNet package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.