subNetwork: Create a subGraph

Description Usage Arguments Value Author(s) Examples

View source: R/Graph.R

Description

The function creates a subgraph with the nodes given in the nodeList or for these nodes including their direct neighbors.

Usage

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subNetwork(nodeList, network, neighbors=c("none", "first"))

Arguments

nodeList

Character vector of nodes, contained in the subgraph.

network

Graph that is used for subgraph extraction.

neighbors

Neighborhood, that is chosen for the subgraph extraction. "none" are only the selected nodes, "first" includes the direct neighbors of the selected nodes.

Value

A graph object.

Author(s)

Marcus Dittrich

Examples

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library(igraph)
el <- cbind(c("a", "b", "c", "d", "e", "f", "d"), c("b", "c", "d", "e", "f", "a", "b"))
graph <- graph.edgelist(el, directed=TRUE)

node.list <- c("a", "b", "c")
graph2 <- subNetwork(nodeList=node.list, network=graph)
## Not run: par(mfrow=c(1,2));
plotModule(graph);
plotModule(graph2)
## End(Not run)

# or in graphNEL format: 
graph3 <- igraph.to.graphNEL(graph)
graph4 <- subNetwork(nodeList=node.list, network=graph3)
graph3
graph4

BioNet documentation built on May 31, 2017, 3:38 p.m.

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