annotation | Accessing annotation information |
append | Append elements to a vector-like object |
as.data.frame | Coerce to a data frame |
as.list | Coerce to a list |
as.vector | Coerce an object into a vector |
BiocGenerics-package | S4 generic functions for Bioconductor |
boxplot | Box plots |
cbind | Combine objects by rows or columns |
clusterApply | Apply operations using clusters |
colSums | Form Row and Column Sums and Means |
combine | Combining or merging different Bioconductor data structures |
dbconn | Accessing SQLite DB information |
density | Kernel density estimation |
dge | Accessors and generic functions used in the context of count... |
dims | Get the dimensions of all elements in a list-like object |
do.call | Execute a function call |
duplicated | Determine duplicate elements |
eval | Evaluate an (unevaluated) expression |
evalq | Evaluate an (unevaluated) expression |
Extremes | Maxima and minima |
fileName | Accessing the file name of an object |
funprog | Common higher-order functions in functional programming... |
get | Return the value of a named object |
grep | Pattern Matching and Replacement |
image | Display a color image |
IQR | The Interquartile Range |
is.unsorted | Test if a vector-like object is not sorted |
lapply | Apply a function over a list-like or vector-like object |
mad | Median Absolute Deviation |
mapply | Apply a function to multiple list-like or vector-like... |
match | Value matching |
mean | Arithmetic Mean |
normalize | Normalize an object |
nrow | The number of rows/columns of an array-like object |
Ontology | Generic Ontology getter |
order | Ordering permutation |
organism_species | Organism and species accessors |
paste | Concatenate strings |
path | Accessing the path of an object |
plotMA | MA-plot: plot differences versus averages for high-throughput... |
plotPCA | PCA-plot: Principal Component Analysis plot |
rank | Ranks the values in a vector-like object |
relist | Re-listing an unlist()ed object |
rep | Replicate elements of a vector-like object |
residuals | Extract model residuals |
row_colnames | Row and column names |
S3-classes-as-S4-classes | S3 classes as S4 classes |
score | Score accessor |
sets | Set operations |
sort | Sorting a vector-like object |
start | The start(), end(), width(), and pos() generic getters and... |
strand | Accessing strand information |
subset | Subsetting vector-like, matrix-like and data-frame-like... |
t | Matrix Transpose |
table | Cross tabulation and table creation |
tapply | Apply a function over a ragged array |
testPackage | Run RUnit package unit tests |
toTable | An alternative to as.data.frame() |
type | Accessing the type of an object |
unique | Extract unique elements |
unlist | Flatten list-like objects |
unsplit | Unsplit a list-like object |
updateObject | Update an object to its current class definition |
var | Variance and Standard Deviation |
weights | Extract model weights |
which | Which values in an object are considered TRUE? |
which.min | What's the index of the first min or max value in an object? |
xtabs | Cross tabulation |
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