yeastSEQCHR1: An annotation data file for CHR1 in the yeastSEQ package

In Biostrings: Efficient manipulation of biological strings

Description

This is a single character string containing DNA sequence of yeast chromosome number 1. The data were obtained from the Saccharomyces Genome Database (ftp://genome-ftp.stanford.edu/pub/yeast/data\_download/sequence/genomic\_sequence/chromosomes/fasta/).

Details

Annotation based on data provided by Yeast Genome project.

Source data built:Yeast Genome data are built at various time intervals. Sources used were downloaded Fri Nov 21 14:00:47 2003 Package built: Fri Nov 21 14:00:47 2003

References

http://www.yeastgenome.org/DownloadContents.shtml

Examples

data(yeastSEQCHR1)
nchar(yeastSEQCHR1)

Example output

Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

[1] 230208

Biostrings documentation built on Nov. 8, 2020, 11:12 p.m.