API for CancerInSilico
An R interface for computational modeling of tumor progression
| Global functions | |
|---|---|
| CancerInSilico | Man page |
| CancerInSilico-package | Man page |
| CellModel-class | Man page |
| CellType-class | Man page |
| DrasdoHohmeModel-class | Man page |
| Drug-class | Man page |
| GeneExpressionParams-class | Man page |
| OffLatticeModel-class | Man page |
| Pathway-class | Man page |
| calibratePathway | Man page Source code |
| cellSummary | Man page |
| cellSummary,CellModel-method | Man page |
| checkDataSet | Man page Source code |
| combineGeneExpression | Man page Source code |
| cppRunModel | Source code |
| getAxisAngle | Man page |
| getAxisAngle,OffLatticeModel-method | Man page |
| getAxisLength | Man page |
| getAxisLength,OffLatticeModel-method | Man page |
| getCellDistance | Man page |
| getCellDistance,OffLatticeModel-method | Man page |
| getCellPhase | Man page |
| getCellPhase,OffLatticeModel-method | Man page |
| getCellType | Man page |
| getCellType,OffLatticeModel-method | Man page |
| getCoordinates | Man page |
| getCoordinates,OffLatticeModel-method | Man page |
| getCycleLength | Man page |
| getCycleLength,OffLatticeModel-method | Man page |
| getDensity | Man page |
| getDensity,OffLatticeModel-method | Man page |
| getEntry | Source code |
| getLocalDensity | Man page |
| getLocalDensity,OffLatticeModel-method | Man page |
| getMeanExp | Man page Source code |
| getNumberOfCells | Man page |
| getNumberOfCells,OffLatticeModel-method | Man page |
| getRadius | Man page |
| getRadius,OffLatticeModel-method | Man page |
| getTrialAcceptRate | Man page |
| getTrialAcceptRate,OffLatticeModel-method | Man page |
| inSilicoCellModel | Man page Source code |
| inSilicoGeneExpression | Man page Source code |
| inSilicoPathways | Man page |
| initialize,CellModel-method | Man page |
| initialize,DrasdoHohmeModel-method | Man page |
| initialize,OffLatticeModel-method | Man page |
| initialize,Pathway-method | Man page |
| interactivePlot | Man page |
| interactivePlot,CellModel-method | Man page |
| modCellTypes | Man page |
| modDefault | Man page |
| modDrugs | Man page |
| modHighDensity | Man page |
| modLargeRun | Man page |
| modLongRun | Man page |
| plotCells | Man page |
| plotCells,OffLatticeModel-method | Man page |
| pwyContactInhibition | Man page |
| pwyGrowth | Man page |
| pwyMitosis | Man page |
| pwySPhase | Man page |
| referenceGeneExpression | Man page |
| run | Man page |
| run,DrasdoHohmeModel-method | Man page |
| run_catch_unit_tests | Source code |
| run_cpp_unit_tests | Source code |
| simulateMicroArray | Man page Source code |
| simulatePathwayActivity | Man page Source code |
| simulateWithLimmaVoom | Man page Source code |
| simulateWithSplatter | Man page Source code |
| voomErrorModel | Man page Source code |
