num_cell_after_QC_filt_scExp: Table of cells before / after QC
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
Description
Usage
Arguments
Value
Examples
View source: R/preprocessing_filtering_reduction.R
Description
Table of cells before / after QC
Usage
1
num_cell_after_QC_filt_scExp(scExp, annot)
Arguments
scExp
A SingleCellExperiment object.
annot
A raw annotation data.frame of cells before filtering.
Value
A formatted kable in HTML.
Examples
1
2
3
4
5
scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot)
scExp_filtered = filter_scExp(scExp)
## Not run: num_cell_after_QC_filt_scExp(
scExp_filtered,SingleCellExperiment::colData(scExp))
## End(Not run)
ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value Examples
View source: R/preprocessing_filtering_reduction.R
Description
Table of cells before / after QC
Usage
1 | num_cell_after_QC_filt_scExp(scExp, annot)
|
Arguments
scExp |
A SingleCellExperiment object. |
annot |
A raw annotation data.frame of cells before filtering. |
Value
A formatted kable in HTML.
Examples
1 2 3 4 5 | scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot)
scExp_filtered = filter_scExp(scExp)
## Not run: num_cell_after_QC_filt_scExp(
scExp_filtered,SingleCellExperiment::colData(scExp))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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