separate_BAM_into_clusters: Separate BAM files into cell cluster BAM files
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
Description
Usage
Arguments
Value
Description
Separate BAM files into cell cluster BAM files
Usage
1
separate_BAM_into_clusters(affectation, odir, merged_bam)
Arguments
affectation
An annotation data.frame containing cell_id and
cell_cluster columns
odir
A valid output directory path
merged_bam
A list of merged bam file paths
@importFrom Rsamtools filterBam ScanBamParam
Value
Create one BAM per cluster from one BAM per condition
ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
Description
Separate BAM files into cell cluster BAM files
Usage
1 | separate_BAM_into_clusters(affectation, odir, merged_bam)
|
Arguments
affectation |
An annotation data.frame containing cell_id and cell_cluster columns |
odir |
A valid output directory path |
merged_bam |
A list of merged bam file paths @importFrom Rsamtools filterBam ScanBamParam |
Value
Create one BAM per cluster from one BAM per condition
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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