warning_DA: Warning for differential_analysis_scExp
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
Description
Usage
Arguments
Value
View source: R/diff_analysis_gene_set_enrichment.R
Description
Warning for differential_analysis_scExp
Usage
1
warning_DA(scExp, de_type, method, qval.th, cdiff.th, block)
Arguments
scExp
A SingleCellExperiment object containing consclust with selected
number of cluster.
de_type
Type of comparisons. Either 'one_vs_rest', to compare each
cluster against all others, or 'pairwise' to make 1 to 1 comparisons.
('one_vs_rest')
method
Wilcoxon or edgerGLM
qval.th
Adjusted p-value threshold. (0.01)
cdiff.th
Fold change threshold. (1)
block
Use batches as blocking factors ?
Value
Warnings or Errors if the input are not correct
ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
View source: R/diff_analysis_gene_set_enrichment.R
Description
Warning for differential_analysis_scExp
Usage
1 | warning_DA(scExp, de_type, method, qval.th, cdiff.th, block)
|
Arguments
scExp |
A SingleCellExperiment object containing consclust with selected number of cluster. |
de_type |
Type of comparisons. Either 'one_vs_rest', to compare each cluster against all others, or 'pairwise' to make 1 to 1 comparisons. ('one_vs_rest') |
method |
Wilcoxon or edgerGLM |
qval.th |
Adjusted p-value threshold. (0.01) |
cdiff.th |
Fold change threshold. (1) |
block |
Use batches as blocking factors ? |
Value
Warnings or Errors if the input are not correct
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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