DMRcaller: Differentially Methylated Regions caller

Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.

Getting started

Package details

AuthorNicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk>, Jonathan Michael Foonlan Tsang <jmft2@cam.ac.uk>, Alessandro Pio Greco <apgrec@essex.ac.uk> and Ryan Merritt <rmerri@essex.ac.uk>
Bioconductor views Coverage DNAMethylation DifferentialMethylation Sequencing Software
MaintainerNicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk>
LicenseGPL-3
Version1.22.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DMRcaller")

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DMRcaller documentation built on Nov. 8, 2020, 5:26 p.m.