Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.
|Author||Nicolae Radu Zabet <[email protected]>, Jonathan Michael Foonlan Tsang <[email protected]>, Alessandro Pio Greco <[email protected]> and Ryan Merritt <[email protected]>|
|Bioconductor views||Coverage DNAMethylation DifferentialMethylation Sequencing Software|
|Date of publication||2018-06-18|
|Maintainer||Nicolae Radu Zabet <[email protected]>|
|Package repository||View on Bioconductor|
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