DMRcaller: Differentially Methylated Regions caller

Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.

Getting started

Package details

AuthorNicolae Radu Zabet <[email protected]>, Jonathan Michael Foonlan Tsang <[email protected]>, Alessandro Pio Greco <[email protected]> and Ryan Merritt <[email protected]>
Bioconductor views Coverage DNAMethylation DifferentialMethylation Sequencing Software
MaintainerNicolae Radu Zabet <[email protected]>
LicenseGPL-3
Version1.14.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DMRcaller")

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DMRcaller documentation built on Nov. 1, 2018, 4:24 a.m.