DMRcaller: Differentially Methylated Regions caller
Version 1.8.0

Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.

Getting started

Package details

AuthorNicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk> and Jonathan Michael Foonlan Tsang <jmft2@cam.ac.uk>
Bioconductor views Coverage DNAMethylation DifferentialMethylation Sequencing Software
MaintainerNicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk>
LicenseGPL-3
Version1.8.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DMRcaller")

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DMRcaller documentation built on May 31, 2017, 3:43 p.m.