DMRcaller: Differentially Methylated Regions caller

Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.

Getting started

Package details

AuthorNicolae Radu Zabet <>, Jonathan Michael Foonlan Tsang <>, Alessandro Pio Greco <> and Ryan Merritt <>
Bioconductor views Coverage DNAMethylation DifferentialMethylation Sequencing Software
MaintainerNicolae Radu Zabet <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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DMRcaller documentation built on Nov. 8, 2020, 5:26 p.m.