saveBismark: Save Bismark

In DMRcaller: Differentially Methylated Regions caller

Description

This function takes as input a GRanges object generated with readBismark and saves the output to a file using Bismark CX report format.

Usage

saveBismark(methylationData, filename)

Arguments

methylationData	the methylation data stored as a GRanges object with four metadata columns (see methylationDataList).
filename	the filename where the data will be saved.

Value

Invisibly returns NULL

Author(s)

Nicolae Radu Zabet

Examples

# load methylation data object
data(methylationDataList)

# save one dataset to a file
saveBismark(methylationDataList[["WT"]], "chr3test_a_thaliana_wt.CX_report")

DMRcaller documentation built on Nov. 8, 2020, 5:26 p.m.