This function takes as input a vector of CX report file produced by Bismark
and returns a
GRanges object with four metadata columns
methylationDataList). The file represents the pooled
bisulfite sequencing data.
The filenames (including path) of the methylation (CX report generated with Bismark) to be read
the methylation data stored as a
object with four metadata columns (see
Nicolae Radu Zabet and Jonathan Michael Foonlan Tsang
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# load methylation data object data(methylationDataList) # save the two datasets saveBismark(methylationDataList[["WT"]], "chr3test_a_thaliana_wt.CX_report") saveBismark(methylationDataList[["met1-3"]], "chr3test_a_thaliana_met13.CX_report") # reload the two datasets and pool them filenames <- c("chr3test_a_thaliana_wt.CX_report", "chr3test_a_thaliana_met13.CX_report") methylationDataPool <- readBismarkPool(filenames)
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