This function takes as input a CX report file produced by Bismark
and returns a
GRanges object with four metadata columns
The file represents the bisulfite sequencing methylation data.
The filename (including path) of the methylation (CX report generated by Bismark) to be read.
the methylation data stored as a
object with four metadata columns (see
Nicolae Radu Zabet and Jonathan Michael Foonlan Tsang
1 2 3 4 5 6 7 8 9 10 11
# load methylation data object data(methylationDataList) # save the one datasets into a file saveBismark(methylationDataList[["WT"]], "chr3test_a_thaliana_wt.CX_report") # load the data methylationDataWT <- readBismark("chr3test_a_thaliana_wt.CX_report") #check that the loading worked all(methylationDataWT == methylationDataList[["WT"]])