poolMethylationDatasets: Pool methylation data

Description Usage Arguments Value Author(s) Examples

View source: R/loadData.R

Description

This function pools together multiple methylation datasets.

Usage

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Arguments

methylationDataList

a GRangesList object where each element of the list is a GRanges object with the methylation data in the corresponding condition (see methylationDataList).

Value

the methylation data stored as a GRanges object with four metadata columns (see methylationDataList).

Author(s)

Nicolae Radu Zabet

Examples

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# load methylation data object
data(methylationDataList)

# pools the two datasets together
pooledMethylationData <- poolMethylationDatasets(methylationDataList)

Example output

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
joining two datasets ...
the sum was performed ...

DMRcaller documentation built on Nov. 1, 2018, 4:24 a.m.