Man pages for DMRcaller
Differentially Methylated Regions caller

analyseReadsInsideRegionsForConditionAnalyse reads inside regions for condition
computeDMRsCompute DMRs
computeMethylationDataCoverageCompute methylation data coverage
computeMethylationProfileCompute methylation profile
computeOverlapProfileCompute Overlaps Profile
DMRcallerCall Differentially Methylated Regions (DMRs) between two...
DMRsNoiseFilterCGThe DMRs between WT and met1-3 in CG context
filterDMRsFilter DMRs
GEsThe genetic elements data
getWholeChromosomesGet whole chromosomes from methylation data
mergeDMRsIterativelyMerge DMRs iteratively
methylationDataListThe methylation data list
plotLocalMethylationProfilePlot local methylation profile
plotMethylationDataCoveragePlot methylation data coverage
plotMethylationProfilePlot Methylation Profile
plotMethylationProfileFromDataPlot methylation profile from data
plotOverlapProfilePlot overlap profile
poolMethylationDatasetsPool methylation data
poolTwoMethylationDatasetsPool two methylation datasets
readBismarkRead Bismark
readBismarkPoolRead Bismark pool
saveBismarkSave Bismark
DMRcaller documentation built on Nov. 17, 2017, 9:37 a.m.