Man pages for DMRcaller
Differentially Methylated Regions caller

analyseReadsInsideRegionsForConditionAnalyse reads inside regions for condition
computeDMRsCompute DMRs
computeDMRsReplicatesCompute DMRs
computeMethylationDataCoverageCompute methylation data coverage
computeMethylationDataSpatialCorrelationCompute methylation data spatial correlation
computeMethylationProfileCompute methylation profile
computeOverlapProfileCompute Overlaps Profile
DMRcallerCall Differentially Methylated Regions (DMRs) between two...
DMRsNoiseFilterCGThe DMRs between WT and met1-3 in CG context
extractGCExtract GC
filterDMRsFilter DMRs
GEsThe genetic elements data
getWholeChromosomesGet whole chromosomes from methylation data
joinReplicatesJoins together two GRange objects in a single containing all...
mergeDMRsIterativelyMerge DMRs iteratively
methylationDataListThe methylation data list
plotLocalMethylationProfilePlot local methylation profile
plotMethylationDataCoveragePlot methylation data coverage
plotMethylationDataSpatialCorrelationPlot methylation data spatial correlation
plotMethylationProfilePlot Methylation Profile
plotMethylationProfileFromDataPlot methylation profile from data
plotOverlapProfilePlot overlap profile
poolMethylationDatasetsPool methylation data
poolTwoMethylationDatasetsPool two methylation datasets
readBismarkRead Bismark
readBismarkPoolRead Bismark pool
saveBismarkSave Bismark
syntheticDataReplicatesSimulated data for biological replicates
DMRcaller documentation built on July 17, 2018, 6 p.m.