API for DMRcaller
Differentially Methylated Regions caller

Global functions
DMRcaller Man page
DMRcaller-package Man page
DMRsNoiseFilterCG Man page
GEs Man page
analyseReadsInsideBins Source code
analyseReadsInsideBinsOneSample Source code
analyseReadsInsideBinsReplicates Source code
analyseReadsInsideRegions Source code
analyseReadsInsideRegionsForCondition Man page Source code Source code
analyseReadsInsideRegionsOneSample Source code
analyseReadsInsideRegionsReplicates Source code
computeAdjuestedPValues Source code
computeAdjuestedPValuesReplicates Source code
computeBetaReg Source code
computeBetaRegSingle Source code
computeDMRs Man page Source code
computeDMRsBins Source code
computeDMRsNeighbourhood Source code
computeDMRsNoiseFilter Source code
computeDMRsReplicates Man page Source code
computeDMRsReplicatesBins Source code
computeDMRsReplicatesNeighbourhood Source code
computeMethylationDataCoverage Man page Source code
computeMethylationDataSpatialCorrelation Man page Source code Source code
computeMethylationProfile Man page Source code
computeOverlapProfile Man page Source code
computeProportionsInDMRs Source code
computeaAjustedPValuesInDMRs Source code
computeaAjustedPValuesInDMRsReplicates Source code
convertProportions Source code
convertResult Source code
countCytosinesInside Source code
countMethylationDataCoverage Source code
countOverlaps Source code
countTotalNumberOfCytosines Source code
epanechnicovKernel Source code
extractGC Man page Source code
filterDMRs Man page Source code
fisherTest Source code
fisherTestPValue Source code
gaussianKernel Source code
getLongestDMRs Source code
getLongestDMRsReplicates Source code
getSumInRange Source code
getWholeChromosomes Man page Source code
joinDMRs Source code
joinDMRsReplicates Source code
joinMethylationData Source code
joinReplicates Man page Source code
measureOverlaps Source code
mergeDMRsIteratively Man page Source code Source code
mergeDMRsIterativelyReplicates Source code
mergeRegions Source code
methylationDataList Man page
movingAverage Source code
movingSum Source code
plotGeneticElements Source code
plotLocalMethylationProfile Man page Source code
plotMethylationDataCoverage Man page Source code
plotMethylationDataSpatialCorrelation Man page Source code
plotMethylationProfile Man page Source code
plotMethylationProfileFromData Man page Source code
plotOverlapProfile Man page Source code
poolMethylationDatasets Man page Source code
poolTwoMethylationDatasets Man page Source code
printGenomicRanges Source code
readBismark Man page Source code
readBismarkPool Man page Source code
sColor Source code
sInteger Source code
saveBismark Man page Source code
scoreTest Source code
smartMergeDMRs Source code
smartMergeDMRsReplicates Source code
splitGRangesEqualy Source code
stopIfNotAll Source code
suitableForBetaReg Source code
sumReadsM Source code Source code
sumReadsM1 Source code
sumReadsM2 Source code
sumReadsN Source code Source code
sumReadsN1 Source code
sumReadsN2 Source code
syntheticDataReplicates Man page
validateConditionReplicates Source code
validateContext Source code
validateGRanges Source code
validateMethylationData Source code
validateMethylationDataList Source code
validateMethylationProfile Source code
validateStatisticalTest Source code
validateStatisticalTestReplicates Source code
DMRcaller documentation built on June 22, 2018, 10 a.m.