API for DMRcaller
Differentially Methylated Regions caller

Global functions
DMRcaller Man page
DMRcaller-package Man page
DMRsNoiseFilterCG Man page
GEs Man page
analyseReadsInsideBins Source code
analyseReadsInsideBinsOneSample Source code
analyseReadsInsideRegions Source code
analyseReadsInsideRegionsForCondition Man page Source code Source code
analyseReadsInsideRegionsOneSample Source code
computeAdjuestedPValues Source code
computeDMRs Man page Source code
computeDMRsBins Source code
computeDMRsNeighbourhood Source code
computeDMRsNoiseFilter Source code
computeMethylationDataCoverage Man page Source code
computeMethylationProfile Man page Source code
computeOverlapProfile Man page Source code
computeaAjustedPValuesInDMRs Source code
countCytosinesInside Source code
countMethylationDataCoverage Source code
countOverlaps Source code
countTotalNumberOfCytosines Source code
epanechnicovKernel Source code
filterDMRs Man page Source code
fisherTest Source code
fisherTestPValue Source code
gaussianKernel Source code
getLongestDMRs Source code
getSumInRange Source code
getWholeChromosomes Man page Source code
joinDMRs Source code
joinMethylationData Source code
measureOverlaps Source code
mergeDMRsIteratively Man page Source code Source code
mergeRegions Source code
methylationDataList Man page
movingAverage Source code
movingSum Source code
plotGeneticElements Source code
plotLocalMethylationProfile Man page Source code
plotMethylationDataCoverage Man page Source code
plotMethylationProfile Man page Source code
plotMethylationProfileFromData Man page Source code
plotOverlapProfile Man page Source code
poolMethylationDatasets Man page Source code
poolTwoMethylationDatasets Man page Source code
printGenomicRanges Source code
readBismark Man page Source code
readBismarkPool Man page Source code
sColor Source code
sInteger Source code
saveBismark Man page Source code
scoreTest Source code
smartMergeDMRs Source code
splitGRangesEqualy Source code
stopIfNotAll Source code
sumReadsM Source code Source code
sumReadsM1 Source code
sumReadsM2 Source code
sumReadsN Source code Source code
sumReadsN1 Source code
sumReadsN2 Source code
validateContext Source code
validateGRanges Source code
validateMethylationData Source code
validateMethylationDataList Source code
validateMethylationProfile Source code
validateStatisticalTest Source code
DMRcaller documentation built on Nov. 17, 2017, 9:37 a.m.