Files in DMRcaller
Differentially Methylated Regions caller
NAMESPACE
DESCRIPTION
build/vignette.rds
data/GEs.RData
data/DMRsNoiseFilterCG.RData
data/datalist
data/methylationDataList.RData
data/syntheticDataReplicates.RData
R/profile.R
R/coverage.R
R/Replicates.R
R/extractGC.R
R/generalFunctions.R
R/localProfile.R
R/regions.R
R/DMRcaller.R
R/statisticalTests.R
R/computeDMRs.R
R/loadData.R
R/spatialCorrelation.R
R/movingAverage.R
vignettes/DMRcaller.bib
vignettes/DMRcaller.Rnw
man/plotMethylationProfileFromData.Rd
man/DMRsNoiseFilterCG.Rd
man/readBismark.Rd
man/computeMethylationDataCoverage.Rd
man/syntheticDataReplicates.Rd
man/saveBismark.Rd
man/plotMethylationDataCoverage.Rd
man/plotOverlapProfile.Rd
man/getWholeChromosomes.Rd
man/methylationDataList.Rd
man/computeMethylationDataSpatialCorrelation.Rd
man/mergeDMRsIteratively.Rd
man/computeDMRs.Rd
man/plotMethylationProfile.Rd
man/filterDMRs.Rd
man/poolTwoMethylationDatasets.Rd
man/computeOverlapProfile.Rd
man/joinReplicates.Rd
man/DMRcaller.Rd
man/plotLocalMethylationProfile.Rd
man/extractGC.Rd
man/readBismarkPool.Rd
man/computeDMRsReplicates.Rd
man/plotMethylationDataSpatialCorrelation.Rd
man/poolMethylationDatasets.Rd
man/computeMethylationProfile.Rd
man/GEs.Rd
man/analyseReadsInsideRegionsForCondition.Rd
tests/runTests.R
inst/NEWS
inst/CITATION
inst/doc/DMRcaller.pdf
inst/doc/DMRcaller.R
inst/doc/DMRcaller.Rnw
inst/unitTests/test_computeDMRs.R
