EBImage: Image processing and analysis toolbox for R

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

AuthorAndrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
Date of publicationNone
MaintainerAndrzej Oleś <andrzej.oles@embl.de>
LicenseLGPL
Version4.16.0
https://github.com/aoles/EBImage

View on Bioconductor

Files in this package

EBImage/CHANGES
EBImage/DESCRIPTION
EBImage/NAMESPACE
EBImage/R
EBImage/R/AllGenerics.R EBImage/R/Image.R EBImage/R/colormap.R EBImage/R/computeFeatures.R EBImage/R/defunct.R EBImage/R/display.R EBImage/R/drawCircle.R EBImage/R/equalize.R EBImage/R/filter2.R EBImage/R/floodFill.R EBImage/R/gblur.R EBImage/R/localCurvature.R EBImage/R/medianFilter.R EBImage/R/morphology.R EBImage/R/normalize.R EBImage/R/objects.R EBImage/R/otsu.R EBImage/R/segment.R EBImage/R/spatial.R EBImage/R/tile.R EBImage/R/tools.R
EBImage/README.md
EBImage/build
EBImage/build/vignette.rds
EBImage/inst
EBImage/inst/CITATION
EBImage/inst/NEWS.Rd
EBImage/inst/doc
EBImage/inst/doc/EBImage-introduction.R
EBImage/inst/doc/EBImage-introduction.Rmd
EBImage/inst/doc/EBImage-introduction.html
EBImage/inst/images
EBImage/inst/images/cells.tif
EBImage/inst/images/nuclei.tif
EBImage/inst/images/sample-color.png
EBImage/inst/images/sample.png
EBImage/inst/images/shapes.png
EBImage/inst/scripts
EBImage/inst/scripts/figDistanceMapDemo.R
EBImage/inst/scripts/readWriteTest.R
EBImage/inst/scripts/readWriteTest.Rout.save
EBImage/inst/viewer
EBImage/inst/viewer/display.css
EBImage/inst/viewer/display.template
EBImage/inst/viewer/viewer.js
EBImage/man
EBImage/man/EBImage-defunct.Rd EBImage/man/EBImage.Rd EBImage/man/Image.Rd EBImage/man/bwlabel.Rd EBImage/man/channel.Rd EBImage/man/colorLabels.Rd EBImage/man/colormap.Rd EBImage/man/combine.Rd EBImage/man/computeFeatures.Rd EBImage/man/display.Rd EBImage/man/distmap.Rd EBImage/man/drawCircle.Rd EBImage/man/equalize.Rd EBImage/man/fillHull.Rd EBImage/man/filter2.Rd EBImage/man/floodFill.Rd EBImage/man/gblur.Rd EBImage/man/io.Rd EBImage/man/localCurvature.Rd EBImage/man/medianFilter.Rd EBImage/man/morphology.Rd EBImage/man/normalize.Rd EBImage/man/ocontour.Rd EBImage/man/otsu.Rd EBImage/man/paintObjects.Rd EBImage/man/propagate.Rd EBImage/man/rmObjects.Rd EBImage/man/spatial.Rd EBImage/man/stackObjects.Rd EBImage/man/thresh.Rd EBImage/man/tile.Rd EBImage/man/transpose.Rd EBImage/man/watershed.Rd
EBImage/src
EBImage/src/EBImage.c
EBImage/src/distmap.c
EBImage/src/distmap.h
EBImage/src/drawCircle.c
EBImage/src/drawCircle.h
EBImage/src/floodFill.cpp
EBImage/src/floodFill.h
EBImage/src/haralick.c
EBImage/src/haralick.h
EBImage/src/medianFilter.c
EBImage/src/medianFilter.h
EBImage/src/morphology.c
EBImage/src/morphology.h
EBImage/src/nativeRaster.c
EBImage/src/nativeRaster.h
EBImage/src/normalize.c
EBImage/src/normalize.h
EBImage/src/objects.c
EBImage/src/objects.h
EBImage/src/ocontour.c
EBImage/src/ocontour.h
EBImage/src/propagate.cpp
EBImage/src/propagate.h
EBImage/src/spatial.c
EBImage/src/spatial.h
EBImage/src/thresh.c
EBImage/src/thresh.h
EBImage/src/tile.c
EBImage/src/tile.h
EBImage/src/tools.c
EBImage/src/tools.h
EBImage/src/watershed.cpp
EBImage/src/watershed.h
EBImage/tests
EBImage/tests/test.R
EBImage/tests/test.Rout.save
EBImage/vignettes
EBImage/vignettes/EBImage-introduction.Rmd
EBImage/vignettes/logo.png

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