4.5 - Heatmap plots

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

library(ELMER.data)
library(ELMER)
library(DT)
library(dplyr)
library(BiocStyle)

Loading required data for plot

# Load results from previous sections
mae <- get(load("mae.rda"))

Heatmap

Generate a heatmap of paired probes.

pair <- read.csv("result/getPair.hypo.pairs.significant.csv")

heatmapPairs(data = mae, 
             group.col = "definition",
             group1 = "Primary solid Tumor", 
             annotation.col = c("years_smoked","gender"),
             group2 = "Solid Tissue Normal",
             pairs = pair,
             filename =  NULL)

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.