Stat.nonpara: U test (non parameter test) for permutation. This is one...

Description Usage Arguments Value

View source: R/StatisticTest.R

Description

U test (non parameter test) for permutation. This is one probe vs nearby gene which is good for computing each probes for nearby genes.

Usage

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Stat.nonpara(Probe, NearGenes, Top = NULL, unmethy = NULL,
  methy = NULL, Meths = Meths, Exps = Exps)

Arguments

Probe

A character of name of Probe in array.

NearGenes

A list of nearby gene for each probe which is output of GetNearGenes function.

Top

A number determines the percentage of top methylated/unmethylated samples. Only used if unmethy and methy are not set.

unmethy

Index of U (unmethylated) group.

methy

Index of M (methylated) group.

Meths

A matrix contains methylation for each probe (row) and each sample (column).

Exps

A matrix contains Expression for each gene (row) and each sample (column).

Value

U test results


ELMER documentation built on Nov. 1, 2018, 2:13 a.m.