TFsurvival.plot: Creates survival plot of based on the expression of a TF

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Description

This function will create a survival plot for the samples with higher, midium, low expression of a given transcription factor. By defau;t samples with higher expression are the top 30

Usage

TFsurvival.plot(data, TF, xlim = NULL, percentage = 0.3, save = TRUE)

Arguments

data	A multi assay Experiment with clinical data in the phenotypic data matrix containing the following columns: vital_status, days_to_last_follow_up and days_to_death. Default from GDC and TCGAbiolinks
TF	A gene symbol
xlim	Limit x axis showed in plot
percentage	A number ranges from 0 to 1 specifying the percentage of samples in the higher and lower expression groups. Default is 0.3
save	Save plot as PDF

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.