geneWidth: Get the sequence length of each gene

In FindMyFriends: Microbial Comparative Genomics in R

Description

This method extracts the width (i.e. number of residues) of each gene in the pangenome.

Usage

geneWidth(object)

## S4 method for signature 'pgLM'
geneWidth(object)

## S4 method for signature 'pgFull'
geneWidth(object)

## S4 method for signature 'pgSlim'
geneWidth(object)

Arguments

object

A pgVirtual subclass

Value

An integer vector with the length of each sequence

Methods (by class)

• pgLM: Get gene width for pgLM and subclasses

• pgFull: Get gene widths for pgFull and subclasses

• pgSlim: Throws error for pgSlim

Note

Required for subclasses of pgVirtual in order to extend the class system of FindMyFriends

Examples

testPG <- .loadPgExample()
head(geneWidth(testPG))

FindMyFriends documentation built on Nov. 8, 2020, 6:46 p.m.