pgSlim-class: Class for pangenome data with no reference to genes

In FindMyFriends: Microbial Comparative Genomics in R

Description

This class is a slim version of pgLM and pgFull that does not store any information pertaining to the actual genes. This means that this class cannot be the basis for the creation of a pangenome but that pgLM or pgFull objects can be coerced down to this representation after the pangenome has been created to make it less burdensome to work with, while still keeping a lot of the functionality of the FindMyFriends framework.

See Also

Other Pangenome_classes: pgFull-class, pgFullLoc-class, pgInMem-class, pgInMemLoc-class, pgLM-class, pgLMLoc-class, pgSlimLoc-class, pgVirtual-class, pgVirtualLoc-class

FindMyFriends documentation built on Nov. 8, 2020, 6:46 p.m.