internalGroupGenes: Add gene grouping to pangenome

In FindMyFriends: Microbial Comparative Genomics in R

Description

This is an internal function, not meant to be called directly. For adding gene grouping manually see manualGrouping. This method is a requirement for classes inheriting from pgVirtual and is not relevant for everyday users.

Usage

groupGenes(object, ...)

## S4 method for signature 'pgVirtual'
groupGenes(object, seqToGeneGroup)

## S4 method for signature 'pgInMem'
groupGenes(object, seqToGeneGroup)

Arguments

object	A pgVirtual subclass
...	Parameters to be passed on
seqToGeneGroup	Integer vector equivalent to the output of seqToGeneGroup on the new object.

Value

An object with the same class as object

Note

For internal use only. Required for extending the class system of FindMyFriends

Required for subclasses of pgVirtual in order to extend the class system of FindMyFriends

FindMyFriends documentation built on Nov. 8, 2020, 6:46 p.m.