Calculate the panchromosome graph
This method creates a graph representation of the panchromosome - The complete set of gene groups linked together by chromosomal position. Each vertice in the graph represent a gene group and each edge represent a positional relation between two gene groups (neighboring each other). Vertices are annotated with number of genes, organism names and strand while edges are annotated with numer of genes (as weight), and organism names.
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A pgVirtualLoc subclass
parameters passed on
Should the returned graph be stripped of all metadata and only capture gene group connectivity. Defaults to FALSE
An igraph object
Methods (by class)
pgVirtualLoc: Panchromosome creation for all pgVirtualLoc subclasses
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