hasParalogueLinks: Checks whether linking of paralogues has been done

In FindMyFriends: Microbial Comparative Genomics in R

Description

This method checks for the existance of paralogue links in the object.

Usage

hasParalogueLinks(object)

## S4 method for signature 'pgVirtual'
hasParalogueLinks(object)

Arguments

object

A pgVirtual subclass

Value

A boolean indicating whether paralogue links have been defined (TRUE) or not (FALSE)

Methods (by class)

• pgVirtual: Check for secondary gene grouping in pgVirtual subclasses

Examples

# No paralogues
testPG <- .loadPgExample(withGroups=TRUE)
hasParalogueLinks(testPG)

# With paralogues
testPG <- .loadPgExample(withGroups=TRUE, withParalogues=TRUE)
hasParalogueLinks(testPG)

FindMyFriends documentation built on Nov. 8, 2020, 6:46 p.m.