Description Usage Arguments Value Note
This method is for internal use only and should not be called directly. Use
addGenomes
instead. It is required for subclasses of pgVirtual.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | mergePangenomes(pg1, pg2, ...)
## S4 method for signature 'pgInMem,pgInMem'
mergePangenomes(pg1, pg2, geneGrouping,
groupInfo, ...)
## S4 method for signature 'pgLM,pgLM'
mergePangenomes(pg1, pg2, geneGrouping, groupInfo,
...)
## S4 method for signature 'pgLMLoc,pgLMLoc'
mergePangenomes(pg1, pg2, geneGrouping,
groupInfo)
## S4 method for signature 'pgFull,pgFull'
mergePangenomes(pg1, pg2, geneGrouping,
groupInfo, ...)
## S4 method for signature 'pgFullLoc,pgFullLoc'
mergePangenomes(pg1, pg2, geneGrouping,
groupInfo)
## S4 method for signature 'pgSlimLoc,pgSlimLoc'
mergePangenomes(pg1, pg2, geneGrouping,
groupInfo)
|
pg1 |
A pgVirtual subclass |
pg2 |
An object of the same class as pg1 |
... |
Parameters to be passed on |
geneGrouping |
The grouping of the genees in the merged pangenome. Equivalent to calling seqToGeneGroup on the new object |
groupInfo |
The metadata on the gene groups in the merged pangenome. Equivalent to calling groupInfo on the new object |
An object of the same class as pg1
For internal use only. Required for extending the class system of FindMyFriends.
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