pgFull-class: Class for in memory pangenome data

In FindMyFriends: Microbial Comparative Genomics in R

Description

This class handles pangenome data without gene location information and with all sequences stored in memory. This makes sequence lookup much faster but also increases the memory footprint of the object thus making it a bad choice for very large pangenome with millions of genes.

Slots

sequences

Either an AAStringSet or DNAStringSet containing all sequences in the pangenome.

See Also

Other Pangenome_classes: pgFullLoc-class, pgInMem-class, pgInMemLoc-class, pgLM-class, pgLMLoc-class, pgSlim-class, pgSlimLoc-class, pgVirtual-class, pgVirtualLoc-class

FindMyFriends documentation built on Nov. 8, 2020, 6:46 p.m.